View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_low_3 (Length: 420)
Name: NF10727_low_3
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 49254768 - 49254965
Alignment:
| Q |
26 |
tggttcaagaagcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatatttt |
125 |
Q |
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| T |
49254768 |
tggttcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatatttt |
49254867 |
T |
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| Q |
126 |
ctacaaattatttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
223 |
Q |
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| T |
49254868 |
ctacaaattatttcaatgatgatggttggtcatttgggtaaactttctctttctagcacagctattgctatctctctctgtgttgtctctggcttcag |
49254965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 73 - 253
Target Start/End: Complemental strand, 49274761 - 49274577
Alignment:
| Q |
73 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttc |
172 |
Q |
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| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
49274662 |
T |
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| Q |
173 |
tctttctagcacagctat----tgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
253 |
Q |
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| T |
49274661 |
tctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
49274577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 49255932 - 49256073
Alignment:
| Q |
260 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
359 |
Q |
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| T |
49255932 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
49256031 |
T |
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| Q |
360 |
taactttccctagtgtttagttttacgcatagatgactttgc |
401 |
Q |
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| T |
49256032 |
taactttccctagtgtttagttttacgcatagatgactttgc |
49256073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 49267028 - 49267227
Alignment:
| Q |
24 |
ggtggttcaagaagcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatatt |
123 |
Q |
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| T |
49267028 |
ggtgattcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgttttctagctctgcctatgatcgccgtcactctgtcacaatatt |
49267127 |
T |
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| Q |
124 |
ttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
223 |
Q |
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| T |
49267128 |
ttctacaaattatttcaatgataatggttggtcgtttgggtaaacttgctctttctagcacagctattgctatctctctctgtggtgtctctggcttcag |
49267227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 49271447 - 49271633
Alignment:
| Q |
37 |
gcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattat |
136 |
Q |
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| T |
49271447 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattat |
49271546 |
T |
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| Q |
137 |
ttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
223 |
Q |
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| T |
49271547 |
ttcaatgatgatggttggtcatttgggtaaacttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcag |
49271633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 49268906 - 49269004
Alignment:
| Q |
264 |
tttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggtataa |
362 |
Q |
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| T |
49268906 |
tttcagccttgagtggtggtcatttgaactcctaatccttctttctggtcttctaccaaatccacagcttgaaacttcagtcttatccatatggtataa |
49269004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 49273704 - 49273738
Alignment:
| Q |
263 |
atttcagctttgagtggtggtcatttgagctccta |
297 |
Q |
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| T |
49273704 |
atttcagctttgagtggtggtcatttgagctccta |
49273738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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