View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10727_low_30 (Length: 204)
Name: NF10727_low_30
Description: NF10727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10727_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 43896669 - 43896839
Alignment:
| Q |
15 |
ggacgtaggaacactcataatgtgtgcaagttccaaaatggcaagcctcgcttcactttgaggctttaccacagcaacttttccattttccattattgtt |
114 |
Q |
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| T |
43896669 |
ggacgtaggaacactcataatgtgtgcaagttccaaaatggcaagcctcgcttcactttgaggctttaccacagcaacttttccattttccattattgtt |
43896768 |
T |
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| Q |
115 |
tactaatttgtttttatactcaaaactaaaaaagattgttgtgttttcagctggtgtagtagtagaagaaa |
185 |
Q |
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| T |
43896769 |
tactaatttgtttttatactcaaaactaaaaaagattgttgtgttttcagcaggtgtagtagtagaagaaa |
43896839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 43908329 - 43908499
Alignment:
| Q |
19 |
gtaggaacactcataatgtgtgcaagttccaaaatggcaagcctcgcttcactttgaggctttaccacagcaacttttccattttccattattgtttact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908329 |
gtaggaacactcataatgtgtgcaagttccaaaatggcaagcctcgcttcactttgagactttaccacagcaacttttccattttccattattgtttact |
43908428 |
T |
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| Q |
119 |
aatttgtttttatactcaaaactaaaaaagattgttgtgttttcagctggtgtagtagtagaagaaagtac |
189 |
Q |
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| T |
43908429 |
aatttgtttttatactcaaaactaaaaaagattgttgtgttttcagctggtgtagtagtagaagaaagtac |
43908499 |
T |
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