View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10728_1 (Length: 510)
Name: NF10728_1
Description: NF10728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10728_1 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Original strand, 50804717 - 50805178
Alignment:
| Q |
20 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804717 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50804816 |
T |
|
| Q |
120 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50804817 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50804916 |
T |
|
| Q |
220 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804917 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50805016 |
T |
|
| Q |
320 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805017 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
50805116 |
T |
|
| Q |
420 |
ttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaac |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50805117 |
ttgtaagagaaccgttgcccgtcgtattctacttttggtttttttctcagactctcaaaaac |
50805178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Complemental strand, 50871160 - 50870699
Alignment:
| Q |
20 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871160 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50871061 |
T |
|
| Q |
120 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
219 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50871060 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50870961 |
T |
|
| Q |
220 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870960 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50870861 |
T |
|
| Q |
320 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870860 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
50870761 |
T |
|
| Q |
420 |
ttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaac |
481 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
50870760 |
ttgtaagagaaccgttgcccgtcgtattctacttttggtttttttctcagactctcaaaaac |
50870699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 24 - 457
Target Start/End: Complemental strand, 19057467 - 19057034
Alignment:
| Q |
24 |
catcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagagacta |
123 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
19057467 |
catcaggacatcctacaatcacacataacatacattagtcttggcattgtggtcctacctaactccggggatttgtttctaccattgtgagcagagaata |
19057368 |
T |
|
| Q |
124 |
cacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
223 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057367 |
cacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
19057268 |
T |
|
| Q |
224 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057267 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
19057168 |
T |
|
| Q |
324 |
gctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttaccttgt |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
19057167 |
gctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagatatatgaacccgtaaaggataccttgt |
19057068 |
T |
|
| Q |
424 |
aagagaaccgttgcccgtcgtattctacttttgg |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
19057067 |
aagagaaccgttgcccgtcgtattctacttttgg |
19057034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 326 - 457
Target Start/End: Complemental strand, 40705780 - 40705653
Alignment:
| Q |
326 |
tagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaa |
425 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| |
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|
| T |
40705780 |
tagacaaaaaacaaacaa---atgaataagttatttgctaaaggagtatttaaatataaaactgtt-aagatatatgaacccgtaaaagttaccttgtaa |
40705685 |
T |
|
| Q |
426 |
gagaaccgttgcccgtcgtattctacttttgg |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
40705684 |
gagaaccgttgcccgtcgtattctacttttgg |
40705653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 331 - 481
Target Start/End: Original strand, 11181 - 11330
Alignment:
| Q |
331 |
aaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaa |
430 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||| | |
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| T |
11181 |
aaaaaaaaaacaacagatgaagaagttatttgctaaaggagtatttaaatataaaattg-ttaagatatatgaacccgtaaaggttaccttgtaagagta |
11279 |
T |
|
| Q |
431 |
ccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaac |
481 |
Q |
| |
|
| ||| || |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
11280 |
ctgtttcctgtcgtactctacttttgggtttttcctcagactctcaaaaac |
11330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 290
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
181 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
271 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
|
| Q |
272 |
cgtaggtagaaccatcttg |
290 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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