View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10728_4 (Length: 379)
Name: NF10728_4
Description: NF10728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10728_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0623 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 46663959 - 46664330
Alignment:
| Q |
8 |
ccaagaatataagcgcctggagtcagaatgcaacatggttgccataaccccagcaaataacaacagcaaagctggtttggattttgcaagactgcaaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46663959 |
ccaagaatataagcgcctggagtcagaatgcaacatggttgccataaccccagcaaataacaacagcaaagctggtttggattttgcaagactgcaaagt |
46664058 |
T |
|
| Q |
108 |
cctgataatgaatccaggccttgctatcagtatatagatctcctcttcttttacctaacatcaatacaagaacacatcgtattaagaaattaagaatagc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
46664059 |
cctgataatgaatccaggccttgctatcagtatatagatctcctcttcttttacctaacatcaatacaagaacacattgtattaagaaattacgaatagc |
46664158 |
T |
|
| Q |
208 |
acatattcatgacatccgactttactaattactcatggattaatctataagaagttatatactctatttttattttgaaaactcggtattcagcccaata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46664159 |
acatattcatgacatccgactttactaattactcatggattaatctataagaagttatatactctatttttattttgaaaactcggtattcagcccaata |
46664258 |
T |
|
| Q |
308 |
ccgactaatccggggaccaatcccactgtccactagcaagggcctcatttaaagcgagagcaaggctctgta |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46664259 |
ccgactaatccggggaccaatcccactgtccactagcaagggcctcatttaaagcgagagcaaggctctgta |
46664330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 40382105 - 40382139
Alignment:
| Q |
310 |
gactaatccggggaccaatcccactgtccactagc |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40382105 |
gactaatccggggaccaatcccactgtccactagc |
40382139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 44610236 - 44610147
Alignment:
| Q |
285 |
aaaactcggtattcagcccaata-ccgactaatccg--gggaccaatcccactgtccactagcaagggcctcatttaaagcgagagcaag |
371 |
Q |
| |
|
|||||||||||||| | |||| | |||||||||||| |||||||||||||| | ||||| ||| ||||| |||||||||| |||||||| |
|
|
| T |
44610236 |
aaaactcggtattcggtccaagaaccgactaatccgatgggaccaatcccaccgcccacttgcaggggccccatttaaagctagagcaag |
44610147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 40381808 - 40381881
Alignment:
| Q |
271 |
ctatttttattttgaaaactcggtattcagcccaat-accgactaatccggggaccaatcccactgtccactag |
343 |
Q |
| |
|
|||||||||| |||||||||| ||| | ||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
40381808 |
ctatttttatcttgaaaactcaatatccggcccaatgaccgactaatccttagaccaatcccaccgtccactag |
40381881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 4603985 - 4603888
Alignment:
| Q |
274 |
tttttattttgaaaactcggtattcagcccaat-accgactaatccg--gggaccaatcccactgtccactagcaagggcctcatttaaagcgagagc |
368 |
Q |
| |
|
||||| ||||||||||||||||| | |||| ||||||||||||| |||||||||||||| ||||||| ||| ||||| | |||||||| ||||| |
|
|
| T |
4603985 |
ttttttttttgaaaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgtccacttgcaggggccccgtttaaagccagagc |
4603888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0623 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0623
Description:
Target: scaffold0623; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 1093 - 1145
Alignment:
| Q |
319 |
ggggaccaatcccactgtccactagcaagggcctcatttaaagcgagagcaag |
371 |
Q |
| |
|
||||||||||||||| ||||||| || ||||| |||||||||| |||||||| |
|
|
| T |
1093 |
ggggaccaatcccaccgtccacttgcgggggccccatttaaagccagagcaag |
1145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 9336 - 9388
Alignment:
| Q |
319 |
ggggaccaatcccactgtccactagcaagggcctcatttaaagcgagagcaag |
371 |
Q |
| |
|
||||||||||||||| ||||||| || ||||| |||||||||| |||||||| |
|
|
| T |
9336 |
ggggaccaatcccaccgtccacttgcgggggccccatttaaagccagagcaag |
9388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 17149493 - 17149553
Alignment:
| Q |
319 |
ggggaccaatcccactgtccactagcaagggcctcatttaaagcgagagcaaggctctgta |
379 |
Q |
| |
|
||||||||||||||| || |||| || ||||| |||||||||| | |||||||||||||| |
|
|
| T |
17149493 |
ggggaccaatcccaccgttcacttgcgggggccccatttaaagccaaagcaaggctctgta |
17149553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 51533004 - 51532897
Alignment:
| Q |
267 |
tactctatttttattttgaaaactcggtattcagcccaa-taccgactaatc--cggggaccaatcccactgtccactagcaagggcctcatttaaagcg |
363 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| | ||| ||||||||||| ||||||||||||||| ||||||| || ||| | ||||||||| |
|
|
| T |
51533004 |
tactcttttttttttttgaaaactcggtattcggatcaagaaccgactaatctgaggggaccaatcccaccgtccacttgcgggggtcccatttaaagtt |
51532905 |
T |
|
| Q |
364 |
agagcaag |
371 |
Q |
| |
|
|||||||| |
|
|
| T |
51532904 |
agagcaag |
51532897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University