View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10728_5 (Length: 367)
Name: NF10728_5
Description: NF10728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10728_5 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 14484551 - 14484219
Alignment:
| Q |
1 |
taggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctgtctgttgtaatccttaaattcaaagagagg |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14484551 |
taggatgtacaccatgttggtttatcaaagatattaaaaaggtattgtttcattgattatata--gtctgtctgttgtaatccttaaattcaaagagagg |
14484454 |
T |
|
| Q |
101 |
gttgtggaattggttgttaaaactgcgagttaactcgtggaaatttgaaaatgaaaatggagtttactcagttgtaaacccgaatttcagtaaatttgaa |
200 |
Q |
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|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |
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| T |
14484453 |
gttgtggaattagttgttaaaactgcgagttaactcgttgaaatttgaaaatgaaaatggagtttactcggttgtaaacccaaattttagtaaatttgaa |
14484354 |
T |
|
| Q |
201 |
aatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagatttcaatagaatttttaatcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
14484353 |
aatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagattttaatagaattttttatcttt |
14484254 |
T |
|
| Q |
301 |
cattccatctcaaagttcacattctggtctttttc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
14484253 |
cattccatctcaaagttcacattctggtctttttc |
14484219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 160 - 352
Target Start/End: Complemental strand, 11605591 - 11605399
Alignment:
| Q |
160 |
gagtttactcagttgtaaacccgaatttcagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagattt |
259 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11605591 |
gagttaactcagttgtaaacccgaattttagtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagattt |
11605492 |
T |
|
| Q |
260 |
gggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttcttctttgtttgtttgat |
352 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11605491 |
gggtgaactcgcaatagatttcaatagaatttttaatctttcattccatctcaaagttcacattctggtctttttcttctttgttagtttgat |
11605399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 11605717 - 11605582
Alignment:
| Q |
1 |
taggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctgtctgttgtaatccttaaattcaaagagagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11605717 |
taggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctgtctgttgtaatccttaaattcaaagagagg |
11605618 |
T |
|
| Q |
101 |
gttgtggaattggttgttaaaactgcgagttaactc |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
11605617 |
gttgtggaattggttgttaaaactgcgagttaactc |
11605582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 33735534 - 33735878
Alignment:
| Q |
1 |
taggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctgtctgttgtaatccttaaattcaaagagagg |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
33735534 |
taggatgtacaccatgttggttaatcaaagatattaaaaaggtattgtttcattgattatata--gtctgtctgttgtattccttaaattcaaagagagg |
33735631 |
T |
|
| Q |
101 |
gttgtggaattggttgttaaaactgcgagttaactcgtggaaatttgaaaatgaaaatggagtttactcagttgtaaacccg------------aatttc |
188 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || ||||| |
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|
| T |
33735632 |
gttgtggaattagttgttaaaactgcgagttaactcgttgaaatttgaaaatgaaaatggagtttactcggttgtaaactcggttgtagactcgaatttt |
33735731 |
T |
|
| Q |
189 |
agtaaatttgaaaatgaaactgagtttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagatttcaatagaa |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33735732 |
agtaaatttgaaaatgaaactgagtttactcaactggacatgaagtgaactcgacaaactcggatagatttgggtaaactcgcaatagattttaatagaa |
33735831 |
T |
|
| Q |
289 |
tttttaatctttcattccatctcaaagttcacattctggtctttttc |
335 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33735832 |
ttttttatctttcattccatctcaaagttcacattctggtctttttc |
33735878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 22473237 - 22473358
Alignment:
| Q |
214 |
ttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaactcgcaatagatttcaatagaatttttaatctttcattccatctcaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
22473237 |
ttactcaactggacatgtagtgaactcgacaaactcggatagatttgggtaaacttgcaatagattttaatagaattttttatctttcattccatctcaa |
22473336 |
T |
|
| Q |
314 |
agttcacattctggtctttttc |
335 |
Q |
| |
|
||||||||||| |||||||||| |
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| T |
22473337 |
agttcacattccggtctttttc |
22473358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25042196 - 25042265
Alignment:
| Q |
1 |
taggatgtacaccatgttgatttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctg |
70 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25042196 |
taggatgtacaccatgttggtttatcaaagatattaaaaaggtattgtttcattgattatagtctgtctg |
25042265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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