View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10728_7 (Length: 352)
Name: NF10728_7
Description: NF10728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10728_7 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 9105218 - 9105561
Alignment:
| Q |
1 |
ctgacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaaatactgactttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105218 |
ctgacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaaatactgactttgc |
9105317 |
T |
|
| Q |
101 |
ttctagcaatgtaacccacatgacttttgaannnnnnnctgttttcccctaaaggctttttggcatattgatcgaagtcaatcggaatcttttcaccatt |
200 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
9105318 |
ttctagcaatgtaacccacatgacttttgaatttttttcagttttcccctaaaggctttttggtatattgatcaaagtcaatcagaatcttttcaccatt |
9105417 |
T |
|
| Q |
201 |
caaacgtttaagcaaaaaatgtgccattcgcgttgcacctctaactctctttttggtaggctcggtaattttctcagtttgtggaggacctgatgcactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105418 |
caaacgtttaagcaaaaaatgtgccattcgcgttgcacctctaactctctttttggtaggctcggtaattttctcagtttgtggaggacctgatgcactc |
9105517 |
T |
|
| Q |
301 |
acgagtgtgttgactctattttcggtaggctgatcattcatctc |
344 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9105518 |
acgagtgtgttgactctattttcggtaggctgatcgttcatctc |
9105561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 22819683 - 22819812
Alignment:
| Q |
1 |
ctgacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaaatactgactttgc |
100 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| ||||||| |||||| | |||| |||||| ||||||||||| || |||||||||||| ||||||| |
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| T |
22819683 |
ctgacaatcgtaaatagtaataccatgatatcttctcaaatctggtctttaatagtc-cgcttataagatcccaatgattcaccaaaatactaactttgc |
22819781 |
T |
|
| Q |
101 |
ttctagcaatgtaacccacatgacttttgaa |
131 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
22819782 |
ttctagcaatggaacccacatgacttttgaa |
22819812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 41076421 - 41076322
Alignment:
| Q |
1 |
ctgacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaaatactgactttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||| |||||| |||||||||||||||| |
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| T |
41076421 |
ctgacaatcataaatagtattaccatgatatcttcctaaatctggtctttaacagtctcgcttacaagatcccaatgatccacaaaaatactgactttgc |
41076322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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