View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10728_low_1 (Length: 394)
Name: NF10728_low_1
Description: NF10728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10728_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 28586304 - 28586676
Alignment:
| Q |
1 |
taatataaaaaagggaattataaaaggcaatctcaaattctcaattgattttatttgacactaatgaacataccaaaatgtattttttatgagttatata |
100 |
Q |
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| T |
28586304 |
taatataaaaaagggaattataaaaggcaatctcaaattctcaattgattttatttgacacta-tgaacataccaaaatgtattttttatgagtta---a |
28586399 |
T |
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| Q |
101 |
atacaatcatctttttcgataacagaagtttcaagcaatgttctcatagctataaaattctatatacaaaacaattggcaattgatttcttgttaatcaa |
200 |
Q |
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| T |
28586400 |
atacactcatctttttcgataacagaagtttcaagcaatgttctcatagctataaaattctatatacaaaacaattggcaattgatttcttgttaatcaa |
28586499 |
T |
|
| Q |
201 |
gaatgaaattgtataattagttgactgcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcatagcagc |
300 |
Q |
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| T |
28586500 |
gaatgaaattgtataattagttgactgcactgcatatgcttcttatgactccagccgatccggttaagggttcaatatctcccatctttatcatagcagt |
28586599 |
T |
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| Q |
301 |
tgcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaac-gatagaatctgtagatcctccactgaat |
376 |
Q |
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| T |
28586600 |
tgcaaagtcggatttgaaagttgtaggattgttgctgtattctgaaacaaaaagaatttgtagaccctccactgaat |
28586676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 196 - 376
Target Start/End: Original strand, 28591583 - 28591763
Alignment:
| Q |
196 |
atcaagaatgaaattgtataattagttgactgcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcata |
295 |
Q |
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| T |
28591583 |
atcaaggaagaatttgtatgattagttgacagcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcata |
28591682 |
T |
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| Q |
296 |
gcagctgcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaacgatagaatctgtagatcctccactgaat |
376 |
Q |
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| T |
28591683 |
gcagctgcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaacgatagaatctgtagatcctccactgaat |
28591763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 209 - 369
Target Start/End: Complemental strand, 28596380 - 28596220
Alignment:
| Q |
209 |
ttgtataattagttgactgcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcatagcagctgcaaagt |
308 |
Q |
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| T |
28596380 |
ttgtaaaattaattgatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagt |
28596281 |
T |
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| Q |
309 |
cagacttaaaagttgtaggattgttgctgtattcagaaacgatagaatctgtagatcctcc |
369 |
Q |
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| T |
28596280 |
cagacttaaaagttgtaggatttttgctgtattcagaaacgatagaatctgtagatcctcc |
28596220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 227 - 369
Target Start/End: Complemental strand, 32494582 - 32494440
Alignment:
| Q |
227 |
gcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcatagcagctgcaaagtcagacttaaaagttgtag |
326 |
Q |
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| T |
32494582 |
gcactgcatatacttcttatgattccagcagatccggttaagggttggatatctcccatctttatcatagcagcagcaaagtctgacttaaaagtagtag |
32494483 |
T |
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| Q |
327 |
gattgttgctgtattcagaaacgatagaatctgtagatcctcc |
369 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32494482 |
gatttttgctgtattcagaaacgatagaatctgtagatcctcc |
32494440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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