View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10728_low_2 (Length: 390)
Name: NF10728_low_2
Description: NF10728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10728_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 36285779 - 36285419
Alignment:
| Q |
18 |
ttaactagtgcccaatttcactaataagtaatatgctaattggttatgagacttggtttcaatttactacacaaaaacaaatttatgcacaagacaagag |
117 |
Q |
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| T |
36285779 |
ttaactggtgtccgatttcactaata-gtaatatgctaattggttatgagacttggtttcaatttactacacaaaaacaaatttatgcacaagacaagag |
36285681 |
T |
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| Q |
118 |
ttctagatttctgggagatgtcttttttaaaactgtcctcacccnnnnnnn-gccgtcacattgacccacatgttcatataaatttttgtacttaactgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36285680 |
ttctagatttctgggagatgtcttttttaaaactctcctcacccaaaaaaaagccgtcacat-gacccacatgttcatataaatttttgtacttaactgc |
36285582 |
T |
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| Q |
217 |
aaaatcatacttatacctctttaaactgaccagcttttctagtattcatgaatctagcttctccaattagaaaagtgaaatataaaaaggattttaaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36285581 |
aaaatcatacttatacctctttaaactgaccagcttttctagtattcatgaatctagcttctccaattagaaaagtgaaatataaaaaggattttaaatg |
36285482 |
T |
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| Q |
317 |
ggagaatggtaatttgtaaaattctctattgaaataacattttgcgtacaccatatgcccttt |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36285481 |
ggagaatggtaatttgtaaaattctctattgaaataacattttgcgtacaccatatgcccttt |
36285419 |
T |
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