View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10728_low_4 (Length: 350)
Name: NF10728_low_4
Description: NF10728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10728_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 9105220 - 9105564
Alignment:
| Q |
1 |
gacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaaatactgactttgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105220 |
gacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaaatactgactttgctt |
9105319 |
T |
|
| Q |
101 |
ctagcaatgtaacccacatgacttttgaannnnnnnctgttttcccctaaaggctttttggtatattgatcgaagtcaatcggaatcttttcaccattca |
200 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
9105320 |
ctagcaatgtaacccacatgacttttgaatttttttcagttttcccctaaaggctttttggtatattgatcaaagtcaatcagaatcttttcaccattca |
9105419 |
T |
|
| Q |
201 |
aacgtttaagcaaaaaatgtgccattcgcgttgcacctctaactctctttttggtaggctcggtaattttctcagtttgtggaggacctgatgcactcac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105420 |
aacgtttaagcaaaaaatgtgccattcgcgttgcacctctaactctctttttggtaggctcggtaattttctcagtttgtggaggacctgatgcactcac |
9105519 |
T |
|
| Q |
301 |
gagtgtgttgactctattttcggtaggctgatcattcatctcact |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9105520 |
gagtgtgttgactctattttcggtaggctgatcgttcatctcact |
9105564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 22819685 - 22819880
Alignment:
| Q |
1 |
gacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaaatactgactttgctt |
100 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| ||||||| |||||| | |||| |||||| ||||||||||| || |||||||||||| ||||||||| |
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| T |
22819685 |
gacaatcgtaaatagtaataccatgatatcttctcaaatctggtctttaatagtc-cgcttataagatcccaatgattcaccaaaatactaactttgctt |
22819783 |
T |
|
| Q |
101 |
ctagcaatgtaacccacatgacttttgaa-nnnnnnnctgttttcccctaaaggctttttggtatattgatcgaagtcaatcggaatcttttcacca |
196 |
Q |
| |
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||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||| || |||||| |||||||| ||| |||||||| |
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| T |
22819784 |
ctagcaatggaacccacatgacttttgaatttttcttctgtattcccctaaaggcgttttggttcatacatcgaattcaatcggtatcctttcacca |
22819880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 41076419 - 41076322
Alignment:
| Q |
1 |
gacaatcataaatagtattaccatgatatcttcccaaatcttgtctttgacagtcacgcttacaagatcccaattatccaccaaaatactgactttgc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||| |||||| |||||||||||||||| |
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| T |
41076419 |
gacaatcataaatagtattaccatgatatcttcctaaatctggtctttaacagtctcgcttacaagatcccaatgatccacaaaaatactgactttgc |
41076322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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