View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10729_1 (Length: 743)
Name: NF10729_1
Description: NF10729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10729_1 |
 | |
|
| [»] scaffold0413 (2 HSPs) |
| | |
|
| [»] scaffold1838 (1 HSPs) |
| | |
|
| [»] scaffold0120 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 557; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 59 - 695
Target Start/End: Complemental strand, 34636456 - 34635834
Alignment:
| Q |
59 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacata |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
34636456 |
tattttcatttatttagtttatcagcaaagtctaacactt------aataccacaaaaacatatatgaatagaaaaa--------atgtcatgccacata |
34636371 |
T |
|
| Q |
159 |
acattatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttct |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
34636370 |
acattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttct |
34636271 |
T |
|
| Q |
259 |
tttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcc |
358 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34636270 |
tttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcc |
34636171 |
T |
|
| Q |
359 |
tcacaagacattcctaaggttgtattgaaccgaaagcacgagcaagtttcttgaccccaaactcaccaataaaacgagttgaactagagtgggagacttg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34636170 |
tcacaagacattcctaaggttgtattgaaccgaaagcacgagcaagtttcttgaccccaaactcaccaataaaacgagttggactagagtgggagacttg |
34636071 |
T |
|
| Q |
459 |
gaatgaaacctggtaatagtactttgagacaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgat |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34636070 |
gaatgaaacctggtaatagtactttgagacaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaagaaggtgggtgatgttgat |
34635971 |
T |
|
| Q |
559 |
gcttggcgtgaaaaggttttttagtagtggttcctttggaaattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatga |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34635970 |
gcttggcgtgaaaaggttttttagtagtggttcctttggaaattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatga |
34635871 |
T |
|
| Q |
659 |
caaggctactgcaatagaaggaattgattcaaccaac |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34635870 |
caaggctactgcaatagaaggaattgattcaaccaac |
34635834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 23260490 - 23260827
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattt--------tcatttatttagtttatcagcaaagtctaacacttcttta |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23260490 |
acatcatcatccacatgaaccaaactgaaatattttcataaaactcatatttctatattttcatttatttagtttatcagcaaa-tctaacacttcttta |
23260588 |
T |
|
| Q |
104 |
-caataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23260589 |
acaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataa |
23260688 |
T |
|
| Q |
203 |
cttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcc |
302 |
Q |
| |
|
||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23260689 |
cttttataaaaggctaaattttaccatatgaattcatattttagttgttttgttcttttcaagagacaagaatctctacctctaattcataacataatcc |
23260788 |
T |
|
| Q |
303 |
tagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23260789 |
taatacttagtaagaacgtatggggaaaaagcccttacc |
23260827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 59 - 341
Target Start/End: Complemental strand, 25005428 - 25005145
Alignment:
| Q |
59 |
tattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacat |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25005428 |
tattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacat |
25005329 |
T |
|
| Q |
158 |
aacattatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttc |
257 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
25005328 |
aaaattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttc |
25005229 |
T |
|
| Q |
258 |
ttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
25005228 |
ttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttacc |
25005145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 32450174 - 32450511
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattt--------tcatttatttagtttatcagcaaagtctaacacttcttta |
103 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32450174 |
acatcatcatgcacatgaaccaaaatgaaatattttcataaaactcatatttctatattttcatttatttagtttatcaacaaagtctaacacttcttta |
32450273 |
T |
|
| Q |
104 |
-caataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataa |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32450274 |
acaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatataattaaactaataa |
32450373 |
T |
|
| Q |
203 |
cttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcc |
302 |
Q |
| |
|
||| ||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
32450374 |
cttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacacaatcc |
32450473 |
T |
|
| Q |
303 |
tagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
32450474 |
tagtacttagtaagaacgtacgggg-aaaagcccttacc |
32450511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 10751480 - 10751637
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattttcatttatttagtttatcagcaaagtctaacacttctttacaatacca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10751480 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattttcatttatttagtttatcagcaaagtctaacacttctttacaatacca |
10751579 |
T |
|
| Q |
112 |
caaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcata |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10751580 |
caaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcata |
10751637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 26182602 - 26182700
Alignment:
| Q |
242 |
tttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||| || ||||||||||||| |||||| ||||||||| | || ||||||||||||||||||||| |
|
|
| T |
26182602 |
tttagttgtttt-ttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc |
26182700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 11166587 - 11166661
Alignment:
| Q |
267 |
gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||| |||||||||| || ||||||| | |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11166587 |
gacaaaaatctctaccactatttcataataagatcctaacacttagtaagaacgtatggggaaaaagcccttacc |
11166661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 34636486 - 34636450
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttc |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34636486 |
acatcatcatccacatggaccaaactgaaatattttc |
34636450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 10751623 - 10751674
Alignment:
| Q |
290 |
cataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
10751623 |
cataacattatcatagtacttagtaagaatgtatggggaaaaggcccttacc |
10751674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 359
Target Start/End: Complemental strand, 24992578 - 24992400
Alignment:
| Q |
177 |
catataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatc |
276 |
Q |
| |
|
||||||||| |||||||| |||| | || |||||||| ||||||| |||| |||| |||||||| ||||||| ||||||||| | |||||||| |
|
|
| T |
24992578 |
catataaaacttaattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttt--tcttttcaaaa-acaagaatt |
24992482 |
T |
|
| Q |
277 |
tctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcct |
359 |
Q |
| |
|
||||| | |||||||||||||| ||||||||||| || || ||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
24992481 |
tctacttataattcataacatatccctagtacttaatatagacatat-gggaaaaagcccttaccattgacgcttttcttcct |
24992400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 59 - 695
Target Start/End: Original strand, 15873912 - 15874540
Alignment:
| Q |
59 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacata |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
15873912 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa--------atgccattccacaaa |
15874003 |
T |
|
| Q |
159 |
acattatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttct |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
15874004 |
acattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttct |
15874103 |
T |
|
| Q |
259 |
tttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcc |
358 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15874104 |
tttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcc |
15874203 |
T |
|
| Q |
359 |
tcacaagacattcctaaggttgtattgaaccgaaagcacgagcaagtttcttgaccccaaactcaccaataaaacgagttgaactagagtgggagacttg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15874204 |
tcacaagacattcctaaggttgtattgaaccgaaagcacgagcaagtttcttgaccccaaactcaccaataaaacgagttggactagagtgggagacttg |
15874303 |
T |
|
| Q |
459 |
gaatgaaacctggtaatagtactttgagacaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgat |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15874304 |
gaatgaaacctggtaatagtactttgagacaagaccaactctgaaagactatgtacaaagatgaggtggttccaagaacaagaaggtgggtgatgttgat |
15874403 |
T |
|
| Q |
559 |
gcttggcgtgaaaagg-ttttttagtagtggttcctttggaaattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatg |
657 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15874404 |
gcttggcgtgaaaaggtttttttagtagtggttcctttggaaattcttaggcttaggcacggtgg-tttggaaatagctgctagatgagatttaaaaatg |
15874502 |
T |
|
| Q |
658 |
acaaggctactgcaatagaaggaattgattcaaccaac |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15874503 |
acaaggctactgcaatagaaggaattgattcaaccaac |
15874540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 21491405 - 21491739
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtatt--------ttcatttatttagtttatcagcaaagtctaacacttcttta |
103 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |||||||| |||| ||||||| |||||||||||| |||| || ||||||||||| |
|
|
| T |
21491405 |
acatcatcatccacatgaaccaaaatgaaatattttcataaaactcatattactatattttcatttctttagtttatcaacaaaatccaacacttctttc |
21491504 |
T |
|
| Q |
104 |
c-aataccacaaaaa---catatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaa |
199 |
Q |
| |
|
| ||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||| | || || ||||||||||||||||||||||||||| |
|
|
| T |
21491505 |
ccaataccacaaaaaaaacatatatgcatatcaaaataaaataaatgtcattctacataacatttt-atgcacacatcatataaaatataattaaactaa |
21491603 |
T |
|
| Q |
200 |
taacttctataaaaggttaaatttcaccatataaattcatattttagttgttttg--ttcttttcaacagacaagaatctctacctttaattcataacat |
297 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
21491604 |
taacttttataaaaggttaaattttaccatataaattcatattttagtttttttgtcttcttttcaaccgacaagaatctctacctctaattcataacat |
21491703 |
T |
|
| Q |
298 |
aatcctagtacttagtaagaacgtatggggaaaaag |
333 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||| |
|
|
| T |
21491704 |
catcctagtacttagtatggacgtatgggaaaaaag |
21491739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 113 - 341
Target Start/End: Complemental strand, 22077860 - 22077634
Alignment:
| Q |
113 |
aaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttctataaa |
212 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
22077860 |
aaaaacatatatgcataggaaaataaagcaaatgtcattctacataacattatcatacacacatcatataaaatataattaaactaataactttttgaaa |
22077761 |
T |
|
| Q |
213 |
aggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttag |
312 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
22077760 |
tggttaaattttaccatataaatttatattttagttgttt--ttcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttag |
22077663 |
T |
|
| Q |
313 |
taagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|| |||| |||||| |||||||||||||| |
|
|
| T |
22077662 |
tatgaacatatgggaaaaaagcccttacc |
22077634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 59 - 341
Target Start/End: Original strand, 18367294 - 18367575
Alignment:
| Q |
59 |
tattttcatttatttagtttatcagcaaagtctaacacttctttac-aataccacaaaaa--catatatgaatagaaaaataaaataaatgtcattccac |
155 |
Q |
| |
|
||||||||||| |||||||||||| |||| || ||||||||||| | ||||||||||||| |||||||| ||| ||||||||||||||||||||| || |
|
|
| T |
18367294 |
tattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaacatatatgcatatcaaaataaaataaatgtcattctac |
18367393 |
T |
|
| Q |
156 |
ataacattatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagtt--gtttt |
253 |
Q |
| |
|
||||||| | ||| | || ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
18367394 |
gtaacattttaatata------at-taaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttaatttggtttt |
18367486 |
T |
|
| Q |
254 |
-gttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| || | |||||| ||||||||||||||||| |
|
|
| T |
18367487 |
ctttcttttcaacaaacaagaatctctacctttaattcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacc |
18367575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 132 - 341
Target Start/End: Complemental strand, 48576540 - 48576333
Alignment:
| Q |
132 |
aaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaa-ctaataacttctataaaaggttaaatttcaccata |
230 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||| |||||||||| |||| | |||||||| |||||| |
|
|
| T |
48576540 |
aaaatagaataaatgtcattctgcatcacattatcatacacacatcatataatatataattaaaactaataactttaataagatattaaattttaccata |
48576441 |
T |
|
| Q |
231 |
taaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaa |
330 |
Q |
| |
|
||||||||||||||| || |||| ||||| ||| || |||||||||||||| ||||||||||||| |||| ||||||||||| | ||||||||||||| |
|
|
| T |
48576440 |
taaattcatattttaattatttt---ctttttaacggataagaatctctacctctaattcataacattatcccagtacttagtatggacgtatggggaaa |
48576344 |
T |
|
| Q |
331 |
aagcccttacc |
341 |
Q |
| |
|
||||||||||| |
|
|
| T |
48576343 |
aagcccttacc |
48576333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 335 - 439
Target Start/End: Complemental strand, 45232984 - 45232879
Alignment:
| Q |
335 |
ccttacccgagacacttttcttcctcacaagacattcctaaggttgtat-tgaaccgaaagcacgagcaagtttcttgaccccaaactcaccaataaaac |
433 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
45232984 |
ccttacctgagacgtttttcttcctcacaagacattcctaagattgtgtctgcaccgaaagcacgagcaagtttctagaccccaatctcaccaataaaac |
45232885 |
T |
|
| Q |
434 |
gagttg |
439 |
Q |
| |
|
||||| |
|
|
| T |
45232884 |
aagttg |
45232879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 207 - 355
Target Start/End: Complemental strand, 9993426 - 9993278
Alignment:
| Q |
207 |
tataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagt |
306 |
Q |
| |
|
||||||| ||| |||| ||||||||||| |||||||| ||||||| |||||||||| |||||||||| |||| || || |||||| | ||||| |
|
|
| T |
9993426 |
tataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaattgttacccctatttaataacaaagccctagc |
9993327 |
T |
|
| Q |
307 |
acttagtaagaacgtatggggaaaaagcccttacccgagacacttttct |
355 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
9993326 |
acttagtaagaacgtgtggggaaaaagcccttaccttagacccttttct |
9993278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 48654376 - 48654477
Alignment:
| Q |
238 |
atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct |
337 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||| | ||| | ||||||| ||||| |||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
48654376 |
atattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatggggaaaaaaccct |
48654473 |
T |
|
| Q |
338 |
tacc |
341 |
Q |
| |
|
|||| |
|
|
| T |
48654474 |
tacc |
48654477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 12196729 - 12196815
Alignment:
| Q |
255 |
ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||| || |||||||||| ||||| || || |||||||| |||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
12196729 |
ttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcacttagtaagaatgtatggggaaaaagcccttacc |
12196815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 15873882 - 15873918
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttc |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15873882 |
acatcatcatccacatggaccaaactgaaatattttc |
15873918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 11036685 - 11036723
Alignment:
| Q |
301 |
cctagtacttagtaagaacgtatggggaaaaagccctta |
339 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
11036685 |
cctagcacttagtaagaacgtgtggggaaaaagccctta |
11036723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 10289388 - 10289429
Alignment:
| Q |
300 |
tcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
10289388 |
tcctagcacttagtatggacgtatggggaaaaagcccttacc |
10289429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 181 - 695
Target Start/End: Complemental strand, 536891 - 536378
Alignment:
| Q |
181 |
taaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctcta |
280 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
536891 |
taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta |
536792 |
T |
|
| Q |
281 |
cctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcctcacaagacattcctaaggttg |
380 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
536791 |
cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcctcacaagacattcctaaggttg |
536692 |
T |
|
| Q |
381 |
tattgaaccgaaagcacgagcaagtttcttgaccccaaactcaccaataaaacgagttgaactagagtgggagacttggaatgaaacctggtaatagtac |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
536691 |
tattgaaccgaaagcacgagcaagtttcttgaccccaaactcaccaataaaacgagttggactagagtgggagacttggaatgaaacctggtaatagtac |
536592 |
T |
|
| Q |
481 |
tttgagacaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgatgcttggcgtgaaaaggtttttt |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
536591 |
tttgagacaagaccagctctgaaagactatgtacaaagatgaggtggttccaagaacaagaaggtgggtgatgttgatgcttggcgtgaaaaggtttttt |
536492 |
T |
|
| Q |
581 |
agtagtggttcctttggaaattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaagga |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
536491 |
agtagtggttcctttggaaattcttaggcttaggcacggtgg-tttggaaatagctgctagatgagattttaaaatgacaaggctactgcaatagaagga |
536393 |
T |
|
| Q |
681 |
attgattcaaccaac |
695 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
536392 |
attgattcaaccaac |
536378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 59 - 261
Target Start/End: Complemental strand, 537089 - 536895
Alignment:
| Q |
59 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacata |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
537089 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa--------atgccattccacata |
536998 |
T |
|
| Q |
159 |
acattatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttct |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
536997 |
acattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttct |
536898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 14 - 341
Target Start/End: Original strand, 4557883 - 4558221
Alignment:
| Q |
14 |
atcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattt--------tcatttatttagtttatcagcaaagtctaacacttcttta-c |
104 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |||||||| ||||| |||||| |||||||||||| |||| || ||||||||||| | |
|
|
| T |
4557883 |
atcatcatccacatgaaccaaaatgaaatattttcataaaactcatatttatatattttcatttctttagtttatcaacaaaatccaacacttctttctc |
4557982 |
T |
|
| Q |
105 |
aataccacaaaa--acatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataa |
202 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||| ||||||| || ||||||||| ||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
4557983 |
aataccacaaaaaaacatatatgcatatcaaaataaaataaaagtcattctacgtaacattattatacacacattatataaaatatgattaaactaataa |
4558082 |
T |
|
| Q |
203 |
cttctataaaaggttaaatttcaccatataaattcatattttagttgttttgt-tcttttcaacagacaagaatctctacctttaattcataacataatc |
301 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||| ||| ||||||||| ||| |
|
|
| T |
4558083 |
cttttataaaaggttaaattttaccatataaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaatcataacatcatc |
4558182 |
T |
|
| Q |
302 |
ctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
4558183 |
ctaatacttagtatagacgtat-gggaaaaagcccttacc |
4558221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 502 - 694
Target Start/End: Complemental strand, 42860923 - 42860733
Alignment:
| Q |
502 |
aaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgatgcttggcgtgaaaaggttttttagtagtggttcctttggaaat |
601 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
42860923 |
aaagactatgtacaaggatgaggtggttcaatgaacaagatggtgggtgatgttgatgcttggcgtgaaaaggttttt-agtagtggttcctttgaaaat |
42860825 |
T |
|
| Q |
602 |
tcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgattcaaccaa |
694 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42860824 |
tcttaggcttaggcatggtg-atttggaaatagctgctaggtgagatttaaaaatgacaaggctactgcaatagaaggaattgattcaaccaa |
42860733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 405 - 500
Target Start/End: Complemental strand, 42861095 - 42860997
Alignment:
| Q |
405 |
tttcttgaccccaaa-ctcaccaataaaacgagttgaactagag--tgggagacttggaatgaaacctggtaatagtactttgagacaagaccagctct |
500 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42861095 |
tttcttgacccccaatctcaccaataaaacgagttggacaagagagtgggagacttagaatgaaacctggtaatagtactttgagacaaggccagctct |
42860997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 27026708 - 27026622
Alignment:
| Q |
255 |
ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||| |||||||||| |||| || || |||||| |||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27026708 |
ttcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcacttagtaaaaacgtatggggaaaaagcccttacc |
27026622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 537119 - 537083
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttc |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
537119 |
acatcatcatccacatggaccaaactgaaatattttc |
537083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 5004640 - 5004969
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattttcatttatttagtttatcagcaaagtctaacacttctttacaatacca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5004640 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattttcatttatttagtttatcagcaaagtctaacacttctttacaatacca |
5004739 |
T |
|
| Q |
112 |
caaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttctataa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5004740 |
caaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttttataa |
5004839 |
T |
|
| Q |
212 |
aaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtactta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5004840 |
aaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaagaatctctacctctaattcataacataatcctagtactta |
5004939 |
T |
|
| Q |
312 |
gtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5004940 |
gtaagaacgtatggggaaaaagcccttacc |
5004969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 59 - 341
Target Start/End: Original strand, 46404538 - 46404812
Alignment:
| Q |
59 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacata |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
46404538 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaat---------gccattccacaaa |
46404628 |
T |
|
| Q |
159 |
acattatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttct |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
46404629 |
acattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttct |
46404728 |
T |
|
| Q |
259 |
tttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatgggg-aaaaagcccttacc |
341 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46404729 |
tttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttacc |
46404812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 146 - 341
Target Start/End: Complemental strand, 16975450 - 16975254
Alignment:
| Q |
146 |
gtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatatttta |
245 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
16975450 |
gtcattccacataaaattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta |
16975351 |
T |
|
| Q |
246 |
gttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtat-ggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||| |
|
|
| T |
16975350 |
gttgttttgttcttttcaacaaacaagaatctctacctctaattcataacataatcctagtacttattaagaatgtatggggggaaaagcccttacc |
16975254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 64 - 359
Target Start/End: Original strand, 11967862 - 11968146
Alignment:
| Q |
64 |
tcatttatttagtttatcagcaaagtctaacacttctttac-aataccacaaaaa--catatatgaatagaaaaataaaataaatgtcattccacataac |
160 |
Q |
| |
|
|||||| |||||||||||| |||| | ||||||||||| | ||||||||||||| |||||||| ||| ||||||||||||||||||||| || ||| |
|
|
| T |
11967862 |
tcatttctttagtttatcaacaaaat--aacacttctttcccaataccacaaaaaaacatatatgcatatcaaaataaaataaatgtcattctacggaac |
11967959 |
T |
|
| Q |
161 |
attatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttg--ttct |
258 |
Q |
| |
|
||| | ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||| |||| |
|
|
| T |
11967960 |
atttt-atacacacatcgtataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagattttttgtcttct |
11968058 |
T |
|
| Q |
259 |
tttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc-cgagacacttttcttc |
357 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||||||||| | |||||| |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
11968059 |
tttca------aagaatctctacc------tcataacatcatcctagtacttagtatggacgtat-gggaaaaaacccttacctcgaga-acttttcttc |
11968144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 239 - 341
Target Start/End: Complemental strand, 16475381 - 16475279
Alignment:
| Q |
239 |
tattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccctt |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
|
|
| T |
16475381 |
tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactctt |
16475282 |
T |
|
| Q |
339 |
acc |
341 |
Q |
| |
|
||| |
|
|
| T |
16475281 |
acc |
16475279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 16975569 - 16975453
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattt--------tcatttatttagtttatcagcaaagtctaacacttcttt- |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16975569 |
acatcatcatccacatgaaccaaactgaaatattttcataaaactcatatttctatattttcatttatttagtttatcagcaaagtctaacacttcttta |
16975470 |
T |
|
| Q |
103 |
acaataccacaaaaaca |
119 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
16975469 |
acaataccacaaaaaca |
16975453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 46404508 - 46404544
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttc |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46404508 |
acatcatcatccacatggaccaaactgaaatattttc |
46404544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 9104261 - 9104175
Alignment:
| Q |
255 |
ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||| |||||||||| ||||| || || |||||| | ||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
9104261 |
ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaaaaacgtatggggaaaaaacccttacc |
9104175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 17542813 - 17542904
Alignment:
| Q |
238 |
atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaa |
331 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||| ||||| || || |||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
17542813 |
atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaaaacttagtaagaacgtatggggaaaa |
17542904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 7337257 - 7337332
Alignment:
| Q |
266 |
agacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||| || |||||| ||| || || ||| | |||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
7337257 |
agacaagcatttctaccattacttaatgacacagtcctagcacttagtatggacgtatggggaaaaagcccttacc |
7337332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 11937787 - 11937838
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattt |
63 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||| |||||||| ||||| |
|
|
| T |
11937787 |
acatcatcatccacatgaaccaaaataaaatattttcataaaactcatattt |
11937838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0413 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: scaffold0413
Description:
Target: scaffold0413; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 59 - 341
Target Start/End: Complemental strand, 9124 - 8841
Alignment:
| Q |
59 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa-taaaataaatgtcattccacat |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9124 |
tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaataaaataaatgtcattccacat |
9025 |
T |
|
| Q |
158 |
aacattatcatacagacatcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttc |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
9024 |
aacattatcatacagacatcatataaaatataattaaactaataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttc |
8925 |
T |
|
| Q |
258 |
ttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8924 |
ttttcaacagacaagaatttatacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
8841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0413; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 9154 - 9118
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttc |
48 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9154 |
acatcatcatccacatggaccaatctgaaatattttc |
9118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-123; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 35761961 - 35762301
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattt--------tcatttatttagtttatcagcaaagtctaacacttcttta |
103 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |||||| | ||||| |||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
35761961 |
acatcatcatccacatgaaccaaaatgaaatattttcataaaacacatatttctatattttcatttatttagtttatctacaaagtctaacacttcatta |
35762060 |
T |
|
| Q |
104 |
-caataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataa |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
35762061 |
acaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccacataacattatcatacacacatcatataaaatatagttaaactaataa |
35762160 |
T |
|
| Q |
203 |
cttct--ataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataat |
300 |
Q |
| |
|
||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
35762161 |
cttttttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataat |
35762260 |
T |
|
| Q |
301 |
cctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
35762261 |
cctagtacttagtatggacgtatggggaaaaagcccttacc |
35762301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 238 - 500
Target Start/End: Complemental strand, 6836056 - 6835794
Alignment:
| Q |
238 |
atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct |
337 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||| ||||| || || || | | | ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6836056 |
atattttaattgttttcttcttttcaaaagacaagaattgctacccctatttaatcataaagccctagcacttagtaagaacgtatggggaaaaagccct |
6835957 |
T |
|
| Q |
338 |
tacccgagacacttttcttcctcacaagacattcctaaggttgtattgaaccgaaagcacgagcaagtttcttgaccccaaactcaccaataaaacgagt |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6835956 |
tacccgagacacttttcttcctcacaagacattcctaaggttgtattgaaccgaaagcacgagcaagtttcttgaccccaatctcaccaataaaacgagt |
6835857 |
T |
|
| Q |
438 |
tgaactagagtgggagacttggaatgaaacctggtaatagtactttgagacaagaccagctct |
500 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6835856 |
tggactagagtgggagacttagaatgaaacctggtaatagtactttgagacaaggccagctct |
6835794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 499 - 695
Target Start/End: Complemental strand, 6835723 - 6835529
Alignment:
| Q |
499 |
ctgaaagactatgtacaaagatgaggtggttccaagaacaggaaggtgggtgatgttgatgcttggcgtgaaaaggttttttagtagtggttcctttgga |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6835723 |
ctgaaagactatgtacaaagatgaggtggttccatgaacaagaaggtgggtgatgttgatgcttggcgtgaaaaggttttt-agtagtggttcctttgga |
6835625 |
T |
|
| Q |
599 |
aattcttaggcttaggcacggtggatttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgattcaaccaac |
695 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6835624 |
aattctttggcttaggcatggtg-atttggaaatagctgctagatgagatttaaaaatgacaaggctactgcaatagaaggaattgattcaaccaac |
6835529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 37667098 - 37667271
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattttcatttatttagtttatcagcaaagtctaacacttctttacaatacca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37667098 |
acatcatcatccacatggaccaaactgaaatattttcataaaactcatattttcatttatttagtttatcagcaaagtctaacacttctttacaatacca |
37667197 |
T |
|
| Q |
112 |
caaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37667198 |
caaaaacatatatgaatagaaaaataaaataaaagtcattccacataacattatcatacagacatcatataaaa |
37667271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 113 - 340
Target Start/End: Original strand, 9537377 - 9537602
Alignment:
| Q |
113 |
aaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttctataaa |
212 |
Q |
| |
|
||||||||||| | |||| || || ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9537377 |
aaaaacatatacgcatagcaacatgaaataaatgtcattctacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaa |
9537476 |
T |
|
| Q |
213 |
aggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttag |
312 |
Q |
| |
|
||||||||||| || ||||||||| |||||||| |||||| ||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||| || |
|
|
| T |
9537477 |
aggttaaattttacaatataaatttatattttacttgttt--ttcttctcaacagacaagaatctatacctctaattcataacatcatcctagtactcag |
9537574 |
T |
|
| Q |
313 |
taagaacgtatggggaaaaagcccttac |
340 |
Q |
| |
|
|| | ||||||| || |||||||||||| |
|
|
| T |
9537575 |
tatggacgtatgaggtaaaagcccttac |
9537602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 207 - 335
Target Start/End: Original strand, 37667265 - 37667393
Alignment:
| Q |
207 |
tataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagt |
306 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
37667265 |
tataaaaggttaaattttatcatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctatt |
37667364 |
T |
|
| Q |
307 |
acttagtaagaacgtatggggaaaaagcc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37667365 |
acttagtaagaacgtatggggaaaaagcc |
37667393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 16074879 - 16074711
Alignment:
| Q |
175 |
atcatataaaatataattaaa-ctaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaaga |
273 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||||||| | ||||| ||||||||||||| |||||| ||||||| ||| ||||| | |
|
|
| T |
16074879 |
atcatataaaatataattaaatctaataacttttataaaagattaaattttaacatatgaattcatattttaattgttt--ttctttttaacggacaaaa |
16074782 |
T |
|
| Q |
274 |
atctctacctttaattcataa---cataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||| || |||||||||| ||| |||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
16074781 |
atctctatctctaattcataatatcatcatcccagtacttagtatgaacgtatgggaaaaaagcccttacc |
16074711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 21264718 - 21264839
Alignment:
| Q |
220 |
atttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaac |
319 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||||| |||||||||| |||||||||| ||||| | || || ||| | ||||| ||||||||||||| |
|
|
| T |
21264718 |
attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtttaatcacaaagccctagcacttagtaagaac |
21264817 |
T |
|
| Q |
320 |
gtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21264818 |
gtatggggaaaaagcccttacc |
21264839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 338135 - 338061
Alignment:
| Q |
266 |
agacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||| |||||| || || |||||||| || ||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
338135 |
agacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacc |
338061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 43407930 - 43408005
Alignment:
| Q |
266 |
agacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||| || |||||| ||| || || ||| | |||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
43407930 |
agacaagcatttctaccattacttaatgacacagtcctagcacttagtatggacgtatggggaaaaagcccttacc |
43408005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 2e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 113 - 341
Target Start/End: Original strand, 28969204 - 28969430
Alignment:
| Q |
113 |
aaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttctataaa |
212 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
28969204 |
aaaaacatatatgcatagcaaaataaaataaatgtcattctacataaaattatcatacacacatcatatagaatataattaaactaataacttttataaa |
28969303 |
T |
|
| Q |
213 |
aggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttag |
312 |
Q |
| |
|
| ||||||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
28969304 |
atgttaaattttaccatataaattaatattttagttgttt--ttcttctcaacagacaagaatttctacctctaattcataacatcatcctagtacttag |
28969401 |
T |
|
| Q |
313 |
taagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|| | ||||||| ||||||| |||||||| |
|
|
| T |
28969402 |
tatggacgtatgaggaaaaaacccttacc |
28969430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 49499351 - 49499045
Alignment:
| Q |
12 |
acatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattt--------tcatttatttagtttatcagcaaagtctaacacttcttta |
103 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |||||||| ||||| |||||| |||||||||||| |||| || ||||||||||| |
|
|
| T |
49499351 |
acatcatcatccacatgaaccaaaatgaaatattttcataaaactcatatttctatattttcatttctttagtttatcaacaaaatccaacacttctttc |
49499252 |
T |
|
| Q |
104 |
c-aataccacaaaaa-catatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaata |
201 |
Q |
| |
|
| ||||||||||||| |||||||| ||| ||||||||||||||||||||| || |||||| | ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
49499251 |
ccaataccacaaaaaacatatatgcatatcaaaataaaataaatgtcattctacgtaacatctt-atacacacattatataaaatataattaaactaata |
49499153 |
T |
|
| Q |
202 |
acttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatc |
301 |
Q |
| |
|
| || ||||||||||||||||| || ||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
49499152 |
atttttataaaaggttaaattttactatataaattcatattttagttttttttttcttctcaacagacaagaatctccacctctaattcataacatgatc |
49499053 |
T |
|
| Q |
302 |
ctagtact |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
49499052 |
ctagtact |
49499045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 40458992 - 40458907
Alignment:
| Q |
255 |
ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||| || |||||||||| |||||| || || |||||| | || ||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
40458992 |
ttctttttaaaagacaagaattgctacctctacttaataacacagtc-tagcacttagtatggacgtatggggaaaaagcccttacc |
40458907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 191 - 341
Target Start/End: Original strand, 32735391 - 32735541
Alignment:
| Q |
191 |
ttaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattc |
290 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32735391 |
ttaaactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc |
32735490 |
T |
|
| Q |
291 |
ataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32735491 |
ataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacc |
32735541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 12774954 - 12775055
Alignment:
| Q |
238 |
atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct |
337 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||| |||||| | ||| | ||||||| ||||| |||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
12774954 |
atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatggggaaaaagccct |
12775051 |
T |
|
| Q |
338 |
tacc |
341 |
Q |
| |
|
|||| |
|
|
| T |
12775052 |
tacc |
12775055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 28267692 - 28267792
Alignment:
| Q |
238 |
atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct |
337 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| |||||| | ||| | ||||||| ||||| |||||||||||||||| | |||||| |||||||| |||| |
|
|
| T |
28267692 |
atattttagttgtttt--tcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtat-gggaaaaaaccct |
28267788 |
T |
|
| Q |
338 |
tacc |
341 |
Q |
| |
|
|||| |
|
|
| T |
28267789 |
tacc |
28267792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 1193765 - 1193600
Alignment:
| Q |
175 |
atcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaa |
274 |
Q |
| |
|
||||||||||| ||||||| |||| ||| ||||||| ||| | || ||||| ||||| |||||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
1193765 |
atcatataaaactcaattaaaataatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa |
1193666 |
T |
|
| Q |
275 |
tctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
| ||||| | || |||||| | | |||| ||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
1193665 |
ttgctacccctgtttaataacaaagtactagcacttagtaagaacttat-gggaaaaagcccttacc |
1193600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 29270792 - 29270702
Alignment:
| Q |
183 |
aaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaat |
275 |
Q |
| |
|
||||||||||||| |||||| || ||||||| |||||||| || || ||| | ||||||||| |||||| |||||||||| |||||||||| |
|
|
| T |
29270792 |
aaatataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgttt--ttcttttcaaaagacaagaat |
29270702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 40447508 - 40447434
Alignment:
| Q |
266 |
agacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
|||||||||| |||||| || || |||||||| || ||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
40447508 |
agacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacc |
40447434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1838 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: scaffold1838
Description:
Target: scaffold1838; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 397 - 221
Alignment:
| Q |
119 |
atatatgaatagaaaaataaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataacttctataaaaggtta |
218 |
Q |
| |
|
||||||| || | ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
397 |
atatatgcatggcaaaataaaataaatggcattctacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggtta |
298 |
T |
|
| Q |
219 |
aatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacat |
297 |
Q |
| |
|
||||| |||||||| ||| |||||||| || ||| ||||||| |||| ||||||||||||| || ||||||||||||| |
|
|
| T |
297 |
aattttaccatatagatttatattttaattattt--ttctttttaacaaacaagaatctctatctctaattcataacat |
221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0120 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0120
Description:
Target: scaffold0120; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 2645 - 2719
Alignment:
| Q |
267 |
gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||||| |||||| || || |||||| | |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2645 |
gacaagaatttctaccactattttataacaaagtcctagcacttagtaagaacgtatggggaaaaagcccttacc |
2719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 22816487 - 22816588
Alignment:
| Q |
238 |
atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct |
337 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||| | ||| || || |||||| | ||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
22816487 |
atattttaattgtttt--tcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaacgtatggggaaaaagccct |
22816584 |
T |
|
| Q |
338 |
tacc |
341 |
Q |
| |
|
|||| |
|
|
| T |
22816585 |
tacc |
22816588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 40841568 - 40841652
Alignment:
| Q |
255 |
ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttac |
340 |
Q |
| |
|
|||||||||| |||||||||| ||||| || || |||||| | ||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
40841568 |
ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtat-gggaaaaagcccttac |
40841652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 35839268 - 35839168
Alignment:
| Q |
175 |
atcatataaaatataattaaactaataacttctataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaacagacaagaa |
274 |
Q |
| |
|
||||||||||| ||||||| |||| ||| ||||||| ||| |||| ||||| ||||| |||||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
35839268 |
atcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa |
35839169 |
T |
|
| Q |
275 |
t |
275 |
Q |
| |
|
| |
|
|
| T |
35839168 |
t |
35839168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 20264999 - 20265073
Alignment:
| Q |
267 |
gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||||| |||||| || |||| |||| ||||||| ||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
20264999 |
gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacc |
20265073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 21051628 - 21051702
Alignment:
| Q |
267 |
gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc |
341 |
Q |
| |
|
||||||||| |||||| || |||| |||| ||||||| ||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
21051628 |
gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacc |
21051702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 356884 - 356975
Alignment:
| Q |
267 |
gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcc |
358 |
Q |
| |
|
||||||||| |||||| || |||| |||| |||||| |||||||||||||||||||||||||| ||||||| |||| |||| ||||| |
|
|
| T |
356884 |
gacaagaatttctaccactacttcaaaacacggtcctagcacttagtaagaacgtatggggaaaaaatccttaccttagacgctttacttcc |
356975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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