View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10729_11 (Length: 333)
Name: NF10729_11
Description: NF10729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10729_11 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 38556419 - 38556717
Alignment:
| Q |
21 |
catctctcccagataggactcatctcttcatctaataaataaataaaagctagttgattgaatgaatggatccatgtgataatgatatatatagagtggt |
120 |
Q |
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| T |
38556419 |
catctctcccagataggactcatctcttcatctaata----aataaaagctagttgattaaatgaatggatccatgtgataatgatatatatagagtggt |
38556514 |
T |
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| Q |
121 |
accataccgtaatttttggagcatttgaatcttctctgaagctgagtatgctatactactatatggtattagtt-nnnnnnnnntgtgcattaaagtgtt |
219 |
Q |
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| T |
38556515 |
accatactgtaatttttggagcatttgaatcttctctgaagctgagtatgctatactactatatggtattagttaaaaaaaaaatgtgcattaaagtgtt |
38556614 |
T |
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| Q |
220 |
tacaaatgaaa-ttcggaaagaaatccttttttatatgtttgttagaatataaggatgagtggtgatggaaaataacaaccgatgatcagtctttgtaat |
318 |
Q |
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| T |
38556615 |
tacaaatgaaatttcggaaagaaatccttttttatatgtttgttagaatataaggatgagtggtgatggaaaataacaaccgatgatcagtctttgtaat |
38556714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 38548317 - 38548486
Alignment:
| Q |
19 |
cacatctctcccagataggactcatctcttcatctaataaataaataaaagctagttgattgaatgaatggatccatgtgataatgatatatatagagtg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
38548317 |
cacatctctcccagataggactcatctcttcatctaataaataaa----agctagttgattaattgaatggatccatgtgataatgatatatatagagtg |
38548412 |
T |
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| Q |
119 |
gtaccataccgtaatttttggagcatttgaatcttctctgaagctgagtatgctatactactatatggtattagt |
193 |
Q |
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| T |
38548413 |
gtaacatattgtaatttg-ggtgcacgtcaatcttctctgacgctgtgtatgctatactactatatggtattagt |
38548486 |
T |
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