View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10729_12 (Length: 322)
Name: NF10729_12
Description: NF10729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10729_12 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 6969337 - 6969097
Alignment:
| Q |
10 |
caacctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataa |
109 |
Q |
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| T |
6969337 |
caacctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataa |
6969238 |
T |
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| Q |
110 |
taaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataactagcaatattgcctaggaa |
209 |
Q |
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| T |
6969237 |
taaagtaaattaagactcgaatgtaagcatagaaatagagattcatactaatgttttaataagactctaatataaaataactagcaatattgcctaggaa |
6969138 |
T |
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| Q |
210 |
ttttcagccttctgcatcttctgcctccttctctgatgaac |
250 |
Q |
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| T |
6969137 |
ttttcagccttctgcatcttctgcctccttctctgatgaac |
6969097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 999959 - 1000088
Alignment:
| Q |
86 |
ttagcatattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatg------ttttaataagactct-- |
177 |
Q |
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| T |
999959 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatact-atactaatgttttaattttaataagaccctaa |
1000057 |
T |
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| Q |
178 |
aatataaaataactagcaatattgcctagga |
208 |
Q |
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| T |
1000058 |
aatataaaataaccagcaatattgcctagga |
1000088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 2178513 - 2178425
Alignment:
| Q |
91 |
atattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaat |
180 |
Q |
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| T |
2178513 |
atattaatctaact-ataataatctaaaataagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaat |
2178425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 51315840 - 51315915
Alignment:
| Q |
114 |
gtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataa |
189 |
Q |
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| T |
51315840 |
gtaaaataagactctattgtaaacatggaaatagatattcatattaacgttttcataagactctaatgcaaaataa |
51315915 |
T |
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