View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10729_14 (Length: 307)
Name: NF10729_14
Description: NF10729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10729_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 1539917 - 1540220
Alignment:
| Q |
4 |
ggaggagcagagagaccacaagcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagac |
103 |
Q |
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| T |
1539917 |
ggaggagcagagagaccacaagcagcaggaagggtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagac |
1540016 |
T |
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| Q |
104 |
aagtaggagatgttttcagaacagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatcagc |
203 |
Q |
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| T |
1540017 |
aagtaggagatgttttcagaacagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatcagc |
1540116 |
T |
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| Q |
204 |
catgatgacaacaatggttgaacaatcagcagagggtgatggagcatcacgtgctgatgaagcactaggaaaatcaacggcccagatgacaaaaatgcag |
303 |
Q |
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| T |
1540117 |
catgatgacaacaatggttgaacaatcagcagagggtgatggagcatcacgtgctgatgaagcactaggaaaatcaacggcccagatgacaaaaatggag |
1540216 |
T |
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| Q |
304 |
agaa |
307 |
Q |
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|||| |
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| T |
1540217 |
agaa |
1540220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 29804009 - 29804130
Alignment:
| Q |
25 |
gcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcagaa |
124 |
Q |
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| T |
29804009 |
gcagcaggaagagaagtagctttggtaacattcaagacaacaccaaactgagcactactcttgaaagcctcacagagacaagaaggagcagttttgagca |
29804108 |
T |
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| Q |
125 |
cagttttcaagccagaacagca |
146 |
Q |
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| T |
29804109 |
cagatttcaaaccagaacagca |
29804130 |
T |
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