View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10729_15 (Length: 304)
Name: NF10729_15
Description: NF10729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10729_15 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 30 - 304
Target Start/End: Complemental strand, 47627332 - 47627058
Alignment:
| Q |
30 |
gtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47627332 |
gtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaa |
47627233 |
T |
|
| Q |
130 |
tatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatattataccgttcaggccaagttaattg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47627232 |
tatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatattataccgttcaggccaagttaattg |
47627133 |
T |
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| Q |
230 |
cttttgcttccgagaatctacaaattatggttagaaccaaacacataagattgaactttaaaatgtgaaacttca |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47627132 |
cttttgcttccgagaatctacaaattatggttagaaccaaacacataagattgaactttaaaatgtgaaacttca |
47627058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 47584416 - 47584262
Alignment:
| Q |
48 |
tctatagctaccatccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatct |
147 |
Q |
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||||||| ||| || || |||||||||||||| || |||||||| ||||| || |||||| | |||||||| ||||||| |||||| ||||| || | |
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| T |
47584416 |
tctatagatacaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattt |
47584317 |
T |
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| Q |
148 |
tgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgat |
202 |
Q |
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|||| |||||||||||||| |||||||||||||| || ||||| ||||| ||||| |
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| T |
47584316 |
tgaggcgagaatcttcatggaggtaaagaattccacgggcaattcctttgatgat |
47584262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 47574698 - 47574562
Alignment:
| Q |
66 |
gccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcat |
165 |
Q |
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|||||||||||||| || ||||||||||||||||| ||||| || |||| ||| ||||| | |||||| ||||| || ||||| ||||||||||||| |
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| T |
47574698 |
gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatgattttgaggcgagaatcttcat |
47574599 |
T |
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| Q |
166 |
gaaggtaaagaattcctcgagcaatccctttaatgat |
202 |
Q |
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| T |
47574598 |
ggagataaagaattccacgggcaactcctttgatgat |
47574562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 47593147 - 47593025
Alignment:
| Q |
60 |
atccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaat |
159 |
Q |
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||||| ||||| |||||||| || ||||| ||||||||||| | ||| || |||||||| || ||||| | ||| || ||||||| ||||||||||||| |
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| T |
47593147 |
atcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaat |
47593048 |
T |
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| Q |
160 |
cttcatgaaggtaaagaattcct |
182 |
Q |
| |
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|||||| | |||||||||||| |
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| T |
47593047 |
attcatgcaaataaagaattcct |
47593025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 6525288 - 6525231
Alignment:
| Q |
153 |
cgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatattatacc |
210 |
Q |
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| T |
6525288 |
cgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatgattttatacc |
6525231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 253
Target Start/End: Original strand, 21968250 - 21968446
Alignment:
| Q |
57 |
accatccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgag |
156 |
Q |
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||||||| ||||| |||||||| || ||||| ||| ||||||| | ||||| |||| ||| || ||||| | ||| || ||||||| ||||| |||| |
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| T |
21968250 |
accatccgtgccaaaccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgag |
21968349 |
T |
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| Q |
157 |
aatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatattataccgttcaggccaagttaattgcttttgcttccgagaatctacaaa |
253 |
Q |
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| T |
21968350 |
aatgctcatgcaaataaagaattcctcgagcaattcctccaatgatgttaaagcgttcaacccaagttaacaacttttgctgatgagaatctacaaa |
21968446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 22086149 - 22086330
Alignment:
| Q |
72 |
ccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggt |
171 |
Q |
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|||||||| || ||| | ||| ||||||| | ||||| |||| ||| |||||||| | |||||| ||||||| ||||| ||||||| |||||| | | |
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| T |
22086149 |
ccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaat |
22086248 |
T |
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| Q |
172 |
aaagaattcctcgagcaatccctttaatgatattataccgttcaggccaagttaattgcttttgcttccgagaatctacaaa |
253 |
Q |
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|||||||||||| |||||| ||| ||||| ||| | |||||| ||||||||| |||||||| ||||||||||||| |
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| T |
22086249 |
aaagaattcctccagcaattcctcctatgatgttaaagcgttcaacccaagttaacaacttttgctgttgagaatctacaaa |
22086330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 228
Target Start/End: Original strand, 36067065 - 36067233
Alignment:
| Q |
60 |
atccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaat |
159 |
Q |
| |
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|||||||||| ||||||||| || || |||| |||||| |||| ||| | | || ||||| ||||||| ||||| |||||| || || ||| |||||| |
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| T |
36067065 |
atccttgccaagccaaaatctgatatctttgcattcattttgtcatccaacaaaatgttgctgggtttaagatcacagtgtatgatttttagatgagaat |
36067164 |
T |
|
| Q |
160 |
cttcatgaaggtaaagaattcctcgagcaatccctttaatgatattataccgttcaggccaagttaatt |
228 |
Q |
| |
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| ||||| || |||||||| ||||| ||||||||| | || || || || ||| || |||||||||||| |
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| T |
36067165 |
cctcatgtagataaagaatacctcgtgcaatccctcttataatcttgtagcgtgcatgccaagttaatt |
36067233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 28829061 - 28829146
Alignment:
| Q |
117 |
ttgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgat |
202 |
Q |
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||||||| ||||| ||||||||||||||| || ||||||||||||||||| ||||||| ||||||| ||| |||| |||||| |
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| T |
28829061 |
ttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatgat |
28829146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 28854668 - 28854807
Alignment:
| Q |
63 |
cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatctt |
162 |
Q |
| |
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||||||||||| ||||| || || || | |||||| || | ||||| |||| ||||| || ||| | ||||||||||||||| || |||||||| | |
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| T |
28854668 |
cttgccatgccgaaatctgatatcttagcattcatgttttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcct |
28854767 |
T |
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| Q |
163 |
catgaaggtaaagaattcctcgagcaatccctttaatgat |
202 |
Q |
| |
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||||||| || |||| ||||||||||| ||||||||||| |
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| T |
28854768 |
catgaagatagagaacacctcgagcaatacctttaatgat |
28854807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 28860026 - 28860165
Alignment:
| Q |
63 |
cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatctt |
162 |
Q |
| |
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||||||||||||||||| || || || | |||||| | | ||||| |||| ||||||| ||| | ||| ||||||||||| || |||||||| | |
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| T |
28860026 |
cttgccatgccaaaatctgaaatcttagcattcatgtcttcgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcct |
28860125 |
T |
|
| Q |
163 |
catgaaggtaaagaattcctcgagcaatccctttaatgat |
202 |
Q |
| |
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||||||||||||||| ||||||||||| |||| |||||| |
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| T |
28860126 |
catgaaggtaaagaacgcctcgagcaataccttgaatgat |
28860165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 2662479 - 2662539
Alignment:
| Q |
63 |
cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttg |
123 |
Q |
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|||||||| ||||| ||||| |||||||||||||| | | ||||| |||||||||||||| |
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| T |
2662479 |
cttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttg |
2662539 |
T |
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