View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10729_3 (Length: 683)
Name: NF10729_3
Description: NF10729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10729_3 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 68 - 601
Target Start/End: Complemental strand, 31095829 - 31095293
Alignment:
| Q |
68 |
atcaacacgatcataagctttattgatatcaattttgagggctagctcacccctccatcttccttttcatagcaaggataatttctagagcaataagtgc |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31095829 |
atcaacacgatcataagctttattgatatcaattttgagggctagcttacccctccatcttccttttcatagcaaggatactttctagagcaataagtgc |
31095730 |
T |
|
| Q |
168 |
gttatccataatcgaccttccttcagtaaa---tgattgcttcaaggatacacatttatctaggcacccctccaatctattagcaaacaaattcgatatc |
264 |
Q |
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||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31095729 |
gttatccataatcgagcttccttcagtaaaggctgattgctccaaggatacacatttatctaggcacccctccaatctattagcaaacaaattcgatatc |
31095630 |
T |
|
| Q |
265 |
gtcttatatatcacagtacaaagggaaataggctataaataaagaatgctaccgagggaattaacattaaatgcaagtcatgttgcacctgataatgtgg |
364 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31095629 |
atcttatatatcacattacaaagggaaataggctgtaaataaagaaagctaccgagggaattaacattaaatgcaagtcatgctgcacctgataatgtga |
31095530 |
T |
|
| Q |
365 |
atcaagttgtgtaccatctgcacattgtgtctttaaagaagataaattaacattagcagcaatagcctgatgcatttgttgcagcaatagagattgctag |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
31095529 |
atcaagttgtgtaccatctgcacattgtgtctttaaagaagataaattaacatcagcagcaatggcctgatgcatttgttgcagcaatagagattgttag |
31095430 |
T |
|
| Q |
465 |
tttgaaaaggccatcatgaatgagagggatacataatcagatgctatattgtcgctgtcgggtttatattcaatcacaaaatcaaagccagggaacatgt |
564 |
Q |
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|||||||| ||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31095429 |
tttgaaaaagccatcatgaatgagcgggatacagaatcggatgctatattgtctctgtcgggtttatattcaatcacaaaatcaaagccaggtaacatgt |
31095330 |
T |
|
| Q |
565 |
gaagccacctttggtgcgcaggtgtttgagtagtttt |
601 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
31095329 |
gaagccacctttgttgcgcaggtgtttgagtagtttt |
31095293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 25 - 594
Target Start/End: Complemental strand, 4597 - 4025
Alignment:
| Q |
25 |
catcaaatcccatccgttcgagaatacccttaagaaagcccaaatcaacacgatcataagctttattgatatcaattttgagggctagctcacccctcca |
124 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4597 |
catcaaatcccatccgttcgagaatagccttaagaaagcccatatcaacacgatcataagctttactgatatcaattttgagggctagctcacccctcca |
4498 |
T |
|
| Q |
125 |
tcttccttttcatagcaaggataatttctagagcaataagtgcgttatccataatcgaccttccttcagtaaa---tgattgcttcaaggatacacattt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |
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| T |
4497 |
tcttccttttcatagcaaggataatttctagagcaataagtatgttatccataatcgaccttccttcaataaaggctgattgctccaaggatacacattt |
4398 |
T |
|
| Q |
222 |
atctaggcacccctccaatctattagcaaacaaattcgatatcgtcttatatatcacagtacaaagggaaataggctataaataaagaatgctaccgagg |
321 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||| ||||||||||| ||||| |||| |
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| T |
4397 |
atctaggcacccgaccaatctattagcaaacaaattcgatagcatcttatatatcacattacaaagggacataggctgtaaataaagaaagctactgagg |
4298 |
T |
|
| Q |
322 |
gaattaacattaaatgcaagtcatgttgcacctgataatgtggatcaagttgtgtaccatctgcacattgtgtctttaaagaagataaattaacattagc |
421 |
Q |
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||||||||||||||||||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4297 |
gaattaacattaaatgcaagtcacgctgaacctgataacgtggatcaagttgtgtaccatctgcacattgtgtctttaaagaagataaattaacatcagc |
4198 |
T |
|
| Q |
422 |
agcaatagcctgatgcatttgttgcagcaatagagattgctagtttgaaaaggccatcatgaatgagagggatacataatcagatgctatattgtcgctg |
521 |
Q |
| |
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|||||| ||| ||||||||||||||||||| ||||||| || |||||| || ||||||||||||||| |||||| | | | |||| | ||||||| || |
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| T |
4197 |
agcaatggccagatgcatttgttgcagcaacagagatttctggtttgagaaagccatcatgaatgagcgggataaagcaacggatgttgtattgtctttg |
4098 |
T |
|
| Q |
522 |
tcgggtttatattcaatcacaaaatcaaagccagggaacatgtgaagccacctttggtgcgcaggtgtttgag |
594 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
4097 |
ccagatttatattcaatcacaaaatcaaagccagggaacatgtgaagccacctttgttgcttaggtgtttgag |
4025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 18717261 - 18716976
Alignment:
| Q |
23 |
atcatcaaatcccatccgttcgagaatacccttaagaaagcccaaatcaacacgatcataagctttattgatatcaattttgagggctagctcacccctc |
122 |
Q |
| |
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||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||| |||||| |||||||||| || || || |||||||||||| |
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| T |
18717261 |
atcatcaaatcccatccgtatcagaacacccttaatgaagccccaatcaacacgatcataggctttaatgatatcaatcttaagagcgagctcacccctc |
18717162 |
T |
|
| Q |
123 |
ca--------tcttccttttcatagcaaggataatttctagagcaataagtgcgttatccataatcgaccttccttcagt---aaatgattgcttcaagg |
211 |
Q |
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| T |
18717161 |
caacccttcgtcttccttttcatagcatgaataatttctgtagcaataagagcgttatccactatcgaccttcctttaatgaaagaagattgctctaaag |
18717062 |
T |
|
| Q |
212 |
atacacatttatctaggcacccctccaatctattagcaaacaaattcgatatcgtcttatatatcacagtacaaagggaaataggc |
297 |
Q |
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| |||||||||||||| | |||| ||||||||| |||||||| || || | | ||||||| | |||| |||||||||| |||||| |
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| T |
18717061 |
agacacatttatctagatatcccttcaatctattggcaaacaactttgacaccatcttatagagcacattacaaagggatataggc |
18716976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 32376033 - 32375856
Alignment:
| Q |
23 |
atcatcaaatcccatccgttcgagaatacccttaagaaagcccaaatcaacacgatcataagctttattgatatcaattttgagggctagctcacccctc |
122 |
Q |
| |
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|||||||||||||||| | |||| ||| |||| |||||| |||||||||||||| | |||||| |||||| ||| || || || |||||||||||| |
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| T |
32376033 |
atcatcaaatcccatctatatcagaacacctttaatgaagccccaatcaacacgatcacatgctttactgatattaatctttagagcgagctcacccctc |
32375934 |
T |
|
| Q |
123 |
ca--------tcttccttttcatagcaaggataatttctagagcaataagtgcgttatccataatcgaccttccttca |
192 |
Q |
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|| |||||||||||||| || |||||||| ||||||||| |||||||||| |||||||||||||||| |
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| T |
32375933 |
caacccttcgtcttccttttcataacattaataatttccgtagcaataagagcgttatccacaatcgaccttccttca |
32375856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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