View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_1 (Length: 756)
Name: NF10730_1
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 657; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 5 - 756
Target Start/End: Original strand, 28605848 - 28606596
Alignment:
| Q |
5 |
aattttacctttcaaattgttttgtgcaatatcatattgtaatgttccctttgaatcaataattaaatatacaatcctccatctattatagtcctcaatt |
104 |
Q |
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| T |
28605848 |
aattttacctttcaaattgttttgtgcaatatcatattgtaatgttccctttgaatcaataattaaatatacaatcctccatctattatagtcctcaatt |
28605947 |
T |
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| Q |
105 |
gggaaaactcttgcactatcacaaaagaagttaaaagagttttaaatttgttcaatttatagaatttgagacattctagttaaaccgaacaagactcgtg |
204 |
Q |
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| T |
28605948 |
gggaaaactcttgcactatcacaaaagaagttaaaagagttttaaatttgttcaatttatagaatttgagacattctagttaaaccgaacaagactcgtg |
28606047 |
T |
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| Q |
205 |
tcattctcatctcgttcaaatactcttaaataatgcaaataacattaaccctttcgtatgcgcgcagttgacagaactatattaaaccaatcaaagatga |
304 |
Q |
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| T |
28606048 |
tcattctcatctcgttcaaatactcttgaataatgcaaataacattaaccctttcgtat----gcagttgacaaaactatattaaaccaatcaaagatga |
28606143 |
T |
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| Q |
305 |
gttgaagtagatacaaatgaaaataattacctgttgaagatctacaaaaatcatcaaattgaaatttaaaagtaaaccagtgagatatgtt-nnnnnnnn |
403 |
Q |
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| T |
28606144 |
gttgaagtagatacaaatgaaaataattacctgttgaagatctacaaaaatcatcaaattgaaatttaaaagtaaagcagtgagatatgttaaaaaaaaa |
28606243 |
T |
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| Q |
404 |
nttgcctaaggatcaaaatacagtttgaaccaaatacacaatgacaaaccatgaaaagttgttcttcaagtatcattatctgattgttcaaccataatat |
503 |
Q |
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| T |
28606244 |
attgcctaaggatcaaaatacagtttgaaccaaatacacaatgacaaaccatgaaaagttgttcttcaagtatcattatctgattgttcaaccataatat |
28606343 |
T |
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| Q |
504 |
ccataatgttgattctgcttcaccttccagtattcagcttcttatatgagctgtcaccaatttcacttaacacccttttcaccccagtgtagtttttcac |
603 |
Q |
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| T |
28606344 |
ccataatgttgattctgcttcaccttcaagtattcagcttcttatatgagttgtcaccaatttcacttaacacccttttcacaccagtgtagtttttcac |
28606443 |
T |
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| Q |
604 |
acacacaacatctaaaccattctctaatccactaaccaaattcataaaataacttttagccacgctagtcagggtgattagcttcacctgaaaatcacga |
703 |
Q |
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| T |
28606444 |
acacacaacatctaaaccattctctaatccactaaccaaattcataaaataacttttagccaccctagtgagggtggttagcttcacctgaaaatcacaa |
28606543 |
T |
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| Q |
704 |
aattcttcctctgacccatcatttagaacctttcttaattcactttctgcaca |
756 |
Q |
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| T |
28606544 |
aattcttcctctgacccatcgtttagaacctttcttaattcactttctgcaca |
28606596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 593 - 731
Target Start/End: Original strand, 28603241 - 28603379
Alignment:
| Q |
593 |
tagtttttcacacacacaacatctaaaccattctctaatccactaaccaaattcataaaataacttttagccacgctagtcagggtgattagcttcacct |
692 |
Q |
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| T |
28603241 |
tagtttttcacacacactacctctaaaccgttatctagttcttttaccaaattcatgaaataacttttagccacccgagccctagtggttagcttcgtcc |
28603340 |
T |
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| Q |
693 |
gaaaatcacgaaattcttcctctgacccatcatttagaa |
731 |
Q |
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| T |
28603341 |
gaaaatcacaaaattcttcctcggacccattatgtagaa |
28603379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 652
Target Start/End: Complemental strand, 19056497 - 19056440
Alignment:
| Q |
595 |
gtttttcacacacacaacatctaaaccattctctaatccactaaccaaattcataaaa |
652 |
Q |
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| T |
19056497 |
gtttttcacacacacaccgtctaaaccattctttaattcattaacaaaatttataaaa |
19056440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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