View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_10 (Length: 320)
Name: NF10730_10
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_10 |
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| [»] scaffold0653 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 8316925 - 8316618
Alignment:
| Q |
1 |
aagcttcccaaccctagttcactctttgcgtattctttttcatcaccatccgctctaaattttccaaccttcactcctgaccctgctaaattctctgcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316925 |
aagcttcccaaccctagttcactctttgcgtattctttttcatcaccatccgctctaaattttccaaccttcactcctgaccctgctaaattctctgcca |
8316826 |
T |
|
| Q |
101 |
aatccacgtatgattcctccatagcctgtaggaattaagataaaaacatgttattaattgaaatttcaagtcaaatgaaataatgcacctttagtaagag |
200 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8316825 |
aattcacgtatgattcctccatagcctgtaagaattaagataaaa-catgttattaattgaaatttcaagtcaaatgaaataatgcaccattagtaagag |
8316727 |
T |
|
| Q |
201 |
aatggtaacataatattgaaagttcaggcaatattgcaagttcaggcatatcattttacctgacagaagcggcaccatggtgcatagagcacaacaatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316726 |
aatggtaacataatattgaaagttcaggcaatattgcaagttcaggcatatcattttacctgacagaagcggcaccatggtgcatagagcacaacaatcc |
8316627 |
T |
|
| Q |
301 |
aaggttctt |
309 |
Q |
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||||||||| |
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| T |
8316626 |
aaggttctt |
8316618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 2235900 - 2236128
Alignment:
| Q |
2 |
agcttcccaaccctagttcactctttgcgtattctttttcatcaccatccgctctaaattttccaaccttcactcctgaccctgctaaattctctgccaa |
101 |
Q |
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|||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2235900 |
agcttcccaacc-tagttcactctttgcacattcttttccatcaccgtccgctctaaattttccaaccttcactcctgaccctgctaagttctctgccaa |
2235998 |
T |
|
| Q |
102 |
atc--cacgtatgattcctccatagcctgtaggaattaagataaaaacatgttattaattgaaatttcaagtcaaatgaaataatgcacctttagtaaga |
199 |
Q |
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||| ||| |||||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
2235999 |
atccacacatatgattcgtccatagcctgtaagaatttagat-taaacatgttattaattgaaatttcaagtcaaatgaagtaatgcagcttttataaga |
2236097 |
T |
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| Q |
200 |
gaatggtaacataatattgaaagttcaggca |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2236098 |
gaatggtaacataatattgaaagttcaggca |
2236128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34805947 - 34806174
Alignment:
| Q |
1 |
aagcttcccaaccctagttcactctttgcgtattctttttcatcaccatccgctctaaattttccaaccttcactcctgaccctgctaaattctctgcca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||| |||| |||||||||| |
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| T |
34805947 |
aagcttcccaacc-tagttcactctttgcacattcttttccatcaccgtccgctctaaattttctaaccttcactcctgaccctactaagttctctgcca |
34806045 |
T |
|
| Q |
101 |
aatccacgtatgattcctccatagcctgtaggaattaagataaaaacatgttattaattgaaatttcaagtcaaatgaaataatgcacctttagtaagag |
200 |
Q |
| |
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||||||| || ||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||| ||| ||||||| |||| |||||| |
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| T |
34806046 |
aatccacatacgattcctccatagcctgtaagaaattagat-taaacatgttattaattgaaatttcaagtcaaacgaagtaatgcagcttttataagag |
34806144 |
T |
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| Q |
201 |
aatggtaacataatattgaaagttcaggca |
230 |
Q |
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| T |
34806145 |
aatggtaacataatattgaaagttcaggca |
34806174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7208 - 7432
Alignment:
| Q |
1 |
aagcttcccaaccctagttcactctttgcgtattctttttcatcaccatccgctctaaattttccaaccttcactcctgaccctgctaaattctctgcca |
100 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
7208 |
aagcttcccaaccatagttcactctttgcatattcttttccatcaccatccgctataaatttcccaaccttcactcctgaccctgctatattctctgcca |
7307 |
T |
|
| Q |
101 |
aatccacgtatgattcctccatagcctgtaggaattaagataaaaacatgttattaattgaaatttcaagtcaaatgaaataatgcacc-tttagtaaga |
199 |
Q |
| |
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||| ||| || |||||||||||||| |||| ||||| || | |||| ||||||||||||||||||||||| ||||||| |||||| || |||||||||| |
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| T |
7308 |
aattcacatacgattcctccatagcatgtaagaatttaggt-taaacttgttattaattgaaatttcaagtaaaatgaagtaatgctccttttagtaaga |
7406 |
T |
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| Q |
200 |
gaatggtaacataatattgaaagttc |
225 |
Q |
| |
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|| | ||||||||||||||||||||| |
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| T |
7407 |
gagtagtaacataatattgaaagttc |
7432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 7435 - 7480
Alignment:
| Q |
246 |
gcatatcattttacctgacagaagcggcaccatggtgcatagagca |
291 |
Q |
| |
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|||||||||| ||||||||| ||| ||||||||| ||||||||||| |
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| T |
7435 |
gcatatcattgtacctgacaaaagtggcaccatgatgcatagagca |
7480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9324691 - 9324915
Alignment:
| Q |
1 |
aagcttcccaaccctagttcactctttgcgtattctttttcatcaccatccgctctaaattttccaaccttcactcctgaccctgctaaattctctgcca |
100 |
Q |
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|
||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
9324691 |
aagcttcccaaccatagttcactctttgcatattcttttccatcaccatccgctataaatttcccaaccttcactcctgaccctgctatattctctgcca |
9324790 |
T |
|
| Q |
101 |
aatccacgtatgattcctccatagcctgtaggaattaagataaaaacatgttattaattgaaatttcaagtcaaatgaaataatgcacc-tttagtaaga |
199 |
Q |
| |
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||| ||| || |||||||||||||| |||| ||||| || | |||| ||||||||||||||||||||||| ||||||| |||||| || |||||||||| |
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| T |
9324791 |
aattcacatacgattcctccatagcatgtaagaatttaggt-taaacttgttattaattgaaatttcaagtaaaatgaagtaatgctccttttagtaaga |
9324889 |
T |
|
| Q |
200 |
gaatggtaacataatattgaaagttc |
225 |
Q |
| |
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|| | ||||||||||||||||||||| |
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| T |
9324890 |
gagtagtaacataatattgaaagttc |
9324915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 9324918 - 9324963
Alignment:
| Q |
246 |
gcatatcattttacctgacagaagcggcaccatggtgcatagagca |
291 |
Q |
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|||||||||| ||||||||| ||| ||||||||| ||||||||||| |
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| T |
9324918 |
gcatatcattgtacctgacaaaagtggcaccatgatgcatagagca |
9324963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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