View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_11 (Length: 313)
Name: NF10730_11
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 3017535 - 3017816
Alignment:
| Q |
13 |
aaaatagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaaagaacacaacaatggagctgcaaactccggcacggtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3017535 |
aaaatagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaaa---cacaacaatggagctgcaaactccggcacggtg |
3017631 |
T |
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| Q |
113 |
gctatgtatgattgcatggcggcggggaaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatga |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017632 |
gctatgtatgattgcacggcggcggggaaatgggtcacgaaaaaaattgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatga |
3017731 |
T |
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| Q |
213 |
agaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggttaaaagaaggaagaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3017732 |
agaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggttataagaaggaagaa |
3017816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 46420605 - 46420304
Alignment:
| Q |
13 |
aaaatagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggt |
111 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
46420605 |
aaaatagaaaaactaaagaactaaacgagtaagctaaataattgatggcttaacatgaacaaagagaacacaacaatggagctgcaaactccggcgcggt |
46420506 |
T |
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| Q |
112 |
ggctatgtatgattgcatggcggcggggaaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatg |
211 |
Q |
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|||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46420505 |
ggctatgtatgattacacggcggcggggaaatgggtcacgaaaaaaattgtcctttggtgaaactaaagggaccaatagaaagctcttgttgaggggatg |
46420406 |
T |
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| Q |
212 |
aagaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggttaaaagaaggaagaaggaagaatggtaag |
311 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46420405 |
aagaaaacgatcttattttctttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggttataagaaggaagaaggaagaatggtaag |
46420306 |
T |
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| Q |
312 |
ct |
313 |
Q |
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|| |
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| T |
46420305 |
ct |
46420304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 34343807 - 34344109
Alignment:
| Q |
13 |
aaaatagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggt |
111 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||| |
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| T |
34343807 |
aaaatagaaaaactaaagaactaaatgagtaagctaaataatagatggcttaacatgaacaaagagaacacaatgatggagctgcaaactctggcgcggt |
34343906 |
T |
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| Q |
112 |
ggctatgtatgattgcatggcggcgggg-aaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggat |
210 |
Q |
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| T |
34343907 |
gactatgtatgattgcacagcggcgggggaaatgggtcacgaaaaaaattgtcctttggtgaaactaaagggaccaatagaaagctattgttgaggggat |
34344006 |
T |
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| Q |
211 |
gaagaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggttaaaagaaggaagaaggaagaatggtaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34344007 |
gaagaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggttgtaagaaggaagaaggaagaatggtaa |
34344106 |
T |
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| Q |
311 |
gct |
313 |
Q |
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||| |
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| T |
34344107 |
gct |
34344109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 37279076 - 37278789
Alignment:
| Q |
17 |
tagaaagactaaagaactaaacgagtaagctaaataatagatggcttaacatgaacaaa-agaacacaacaatggagctgcaaactccggcacggtggct |
115 |
Q |
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|||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |
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| T |
37279076 |
tagaaaaattaaagaattaaatgagtaagctaaataatagatggcttaacatgaacaaagagaacacaacaatggagctgcaaactccggagccgtggct |
37278977 |
T |
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| Q |
116 |
atgtatgattgcatggcggcgggg--aaatgggtcacgnnnnnnnttgtccttttgtgaaactaaagggaccaatagaaagctcttgttgaggggatgaa |
213 |
Q |
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||||||||||||| || |||||| |||||||||||| | || | | |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37278976 |
atgtatgattgcaccgcagcgggggaaaatgggtcacgcaaaaaaatttcatgtggtgaaactaaagggaccaatagaaagctctcgttgaggggatgaa |
37278877 |
T |
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| Q |
214 |
gaaaacgatcttattttgtttgatcagtgaaaatggggctcagattcgcacctaaaatggtggttcggttaaaagaaggaagaaggaa |
301 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||| |
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| T |
37278876 |
gaaaacgatcttactttgtttgatcagtgaaaatggggctcaaatttgcaccaaaaatggtggttcggttataagaaggaagaaggaa |
37278789 |
T |
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