View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_12 (Length: 307)
Name: NF10730_12
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_12 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 20623993 - 20624176
Alignment:
| Q |
8 |
aagcaaagggtcgagagttagaaaacttattcaatgaaaagccatttagttgctattaaagtgactgcaccaattttcaaatatagtgacattttgattt |
107 |
Q |
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| T |
20623993 |
aagcaaagggtcgagagttagaaaacttattcaacgaaaagccatttatttgctattaaagtgactgcaccaattttcaaatatagtgacattttgattt |
20624092 |
T |
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| Q |
108 |
cacannnnnnnnaaaattcctttttggatagaatttctacaatacatttttctgattaaaattttggcttcatcatccattatt |
191 |
Q |
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| T |
20624093 |
cacattttttttataattcctttttggatagaatttctacaatacatttttctgattaaaattttggcttcatcatccattatt |
20624176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 44823962 - 44824080
Alignment:
| Q |
185 |
cattattatcagaagaaaggatggaagccagcttaattagtatgtgcagatacatttagagctgctgcatttgatcaattgaagcaaaatgccactaaag |
284 |
Q |
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| T |
44823962 |
cattgttatcagaagaaaggatggaagccagctt---tagtgtgtgcagatacatttagagctggtgcatttgatcaattgaagcaaaatgctactaaag |
44824058 |
T |
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| Q |
285 |
ctaaaattcctttttgtggaag |
306 |
Q |
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| T |
44824059 |
ctaagatccctttttatggaag |
44824080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 2204910 - 2204794
Alignment:
| Q |
187 |
ttattatcagaagaaaggatggaagccagcttaattagtatgtgcagatacatttagagctgctgcatttgatcaattgaagcaaaatgccactaaagct |
286 |
Q |
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| T |
2204910 |
ttatcatcaaaagaaaggctggaagccagctc---tagtatgtgcagatacattcagagctggtgcgtttgatcagttgaagcaaaatgcaaccaaagct |
2204814 |
T |
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| Q |
287 |
aaaattcctttttgtggaag |
306 |
Q |
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|| || ||||| | |||||| |
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| T |
2204813 |
aagatccctttctatggaag |
2204794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 33168678 - 33168626
Alignment:
| Q |
222 |
tagtatgtgcagatacatttagagctgctgcatttgatcaattgaagcaaaat |
274 |
Q |
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|||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
33168678 |
tagtttgtgcagatacatttagagatggtgcatttgatcaattgaagcaaaat |
33168626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 33159341 - 33159289
Alignment:
| Q |
222 |
tagtatgtgcagatacatttagagctgctgcatttgatcaattgaagcaaaat |
274 |
Q |
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|||| ||||||||| ||||||||| || ||||||||||||||||||||||||| |
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| T |
33159341 |
tagtttgtgcagatgcatttagagatggtgcatttgatcaattgaagcaaaat |
33159289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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