View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10730_4 (Length: 473)

Name: NF10730_4
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10730_4
NF10730_4
[»] chr2 (20 HSPs)
chr2 (27-473)||(1833386-1833837)
chr2 (28-122)||(15926349-15926443)
chr2 (35-139)||(32242225-32242329)
chr2 (27-110)||(43617746-43617829)
chr2 (27-131)||(32293883-32293986)
chr2 (20-121)||(35404356-35404457)
chr2 (57-124)||(13833105-13833172)
chr2 (38-85)||(32258367-32258414)
chr2 (61-123)||(2308749-2308811)
chr2 (56-121)||(10657878-10657943)
chr2 (60-123)||(30850271-30850334)
chr2 (56-122)||(18899964-18900030)
chr2 (56-122)||(25288611-25288677)
chr2 (56-122)||(33136064-33136130)
chr2 (61-122)||(15224234-15224295)
chr2 (56-121)||(28739983-28740048)
chr2 (56-121)||(40829635-40829700)
chr2 (56-88)||(214979-215011)
chr2 (57-121)||(7027352-7027416)
chr2 (57-121)||(18177720-18177784)
[»] chr3 (27 HSPs)
chr3 (262-473)||(35505894-35506106)
chr3 (262-473)||(35523290-35523502)
chr3 (268-473)||(35535718-35535924)
chr3 (27-131)||(25049841-25049945)
chr3 (56-122)||(48379596-48379662)
chr3 (57-122)||(4962767-4962832)
chr3 (56-122)||(21386520-21386586)
chr3 (56-124)||(33693255-33693323)
chr3 (59-122)||(7665593-7665656)
chr3 (57-122)||(43172927-43172992)
chr3 (56-113)||(54629297-54629354)
chr3 (27-139)||(22489503-22489615)
chr3 (56-124)||(44905541-44905609)
chr3 (56-122)||(8598658-8598724)
chr3 (57-139)||(17946675-17946757)
chr3 (57-139)||(20833344-20833426)
chr3 (57-139)||(26107776-26107858)
chr3 (56-122)||(49296115-49296181)
chr3 (57-139)||(51737358-51737440)
chr3 (61-139)||(52617643-52617721)
chr3 (56-122)||(53835961-53836027)
chr3 (56-121)||(31645950-31646015)
chr3 (56-121)||(37455293-37455358)
chr3 (56-105)||(40064277-40064326)
chr3 (56-113)||(50761797-50761854)
chr3 (56-88)||(16155163-16155195)
chr3 (57-121)||(50902998-50903062)
[»] chr8 (16 HSPs)
chr8 (27-131)||(37131313-37131417)
chr8 (38-131)||(24067087-24067180)
chr8 (59-131)||(17234716-17234788)
chr8 (56-122)||(32497989-32498055)
chr8 (57-122)||(8029876-8029941)
chr8 (56-121)||(9288182-9288247)
chr8 (37-122)||(27878670-27878755)
chr8 (37-122)||(28018851-28018936)
chr8 (59-103)||(41393958-41394002)
chr8 (56-139)||(10295009-10295092)
chr8 (61-139)||(16364159-16364237)
chr8 (58-123)||(7760809-7760874)
chr8 (59-88)||(12522491-12522520)
chr8 (56-121)||(18305664-18305729)
chr8 (56-121)||(19717562-19717627)
chr8 (56-88)||(43166397-43166429)
[»] chr6 (11 HSPs)
chr6 (27-131)||(13461343-13461447)
chr6 (57-122)||(16438706-16438771)
chr6 (38-122)||(28900873-28900957)
chr6 (58-122)||(31975687-31975751)
chr6 (61-131)||(3000244-3000314)
chr6 (56-122)||(1463706-1463772)
chr6 (58-124)||(2606896-2606962)
chr6 (56-122)||(6788099-6788165)
chr6 (59-121)||(7497548-7497610)
chr6 (59-121)||(14262125-14262187)
chr6 (57-121)||(31067880-31067944)
[»] chr4 (28 HSPs)
chr4 (28-122)||(33138771-33138865)
chr4 (27-121)||(50517163-50517257)
chr4 (28-121)||(24966558-24966651)
chr4 (56-131)||(871809-871883)
chr4 (27-88)||(46286679-46286740)
chr4 (40-124)||(26491159-26491243)
chr4 (27-122)||(46862953-46863048)
chr4 (56-122)||(32322514-32322580)
chr4 (58-131)||(55165526-55165599)
chr4 (56-124)||(32889895-32889963)
chr4 (59-139)||(41725564-41725644)
chr4 (27-122)||(42937449-42937544)
chr4 (56-139)||(49501203-49501286)
chr4 (56-139)||(49507268-49507351)
chr4 (57-139)||(5800413-5800495)
chr4 (28-77)||(12754489-12754538)
chr4 (61-122)||(23671412-23671473)
chr4 (56-121)||(29855964-29856029)
chr4 (61-121)||(2326700-2326760)
chr4 (56-139)||(49834504-49834587)
chr4 (56-122)||(8084208-8084274)
chr4 (56-122)||(29469162-29469228)
chr4 (56-85)||(14334393-14334422)
chr4 (56-105)||(23987645-23987694)
chr4 (57-121)||(5441851-5441915)
chr4 (57-121)||(27768513-27768577)
chr4 (56-88)||(30967064-30967096)
chr4 (57-121)||(54341591-54341655)
[»] chr1 (26 HSPs)
chr1 (57-122)||(52182347-52182412)
chr1 (24-122)||(3593234-3593332)
chr1 (56-122)||(49971631-49971697)
chr1 (56-124)||(5494781-5494849)
chr1 (27-139)||(32760117-32760229)
chr1 (57-122)||(47371610-47371675)
chr1 (57-121)||(8140919-8140983)
chr1 (58-122)||(28403981-28404045)
chr1 (56-119)||(25253513-25253576)
chr1 (56-122)||(3583591-3583657)
chr1 (25-122)||(11579135-11579232)
chr1 (56-121)||(15834720-15834785)
chr1 (61-122)||(35177245-35177306)
chr1 (56-124)||(9192044-9192112)
chr1 (61-124)||(5209401-5209464)
chr1 (56-139)||(46328433-46328516)
chr1 (56-122)||(4005087-4005153)
chr1 (61-91)||(27257924-27257954)
chr1 (56-121)||(8147337-8147402)
chr1 (56-121)||(18798899-18798964)
chr1 (57-122)||(45273015-45273080)
chr1 (57-121)||(6313024-6313088)
chr1 (57-121)||(9322194-9322258)
chr1 (57-121)||(25612540-25612604)
chr1 (56-88)||(25830968-25831000)
chr1 (57-121)||(29396120-29396184)
[»] chr5 (13 HSPs)
chr5 (57-122)||(16548881-16548946)
chr5 (59-124)||(34218471-34218536)
chr5 (61-170)||(21489904-21490015)
chr5 (58-124)||(29716825-29716891)
chr5 (57-119)||(29758706-29758768)
chr5 (61-113)||(5651232-5651284)
chr5 (57-121)||(13926380-13926444)
chr5 (56-122)||(1460834-1460900)
chr5 (59-121)||(5949562-5949624)
chr5 (56-122)||(7125201-7125267)
chr5 (56-121)||(4549947-4550012)
chr5 (56-121)||(37014302-37014367)
chr5 (57-121)||(39852819-39852883)
[»] chr7 (24 HSPs)
chr7 (29-131)||(11735216-11735318)
chr7 (38-113)||(33497137-33497212)
chr7 (56-122)||(44121626-44121692)
chr7 (57-139)||(44256431-44256513)
chr7 (56-121)||(12740816-12740881)
chr7 (57-122)||(37328354-37328419)
chr7 (56-121)||(48136922-48136987)
chr7 (56-88)||(37972604-37972636)
chr7 (56-124)||(42610616-42610684)
chr7 (56-87)||(16709434-16709465)
chr7 (56-87)||(17683670-17683701)
chr7 (26-65)||(26201891-26201930)
chr7 (56-87)||(33383120-33383151)
chr7 (56-122)||(14741425-14741491)
chr7 (57-131)||(27148845-27148919)
chr7 (56-122)||(29585960-29586026)
chr7 (58-124)||(41827776-41827842)
chr7 (56-121)||(18838856-18838921)
chr7 (56-121)||(40460408-40460473)
chr7 (57-121)||(510093-510157)
chr7 (56-88)||(8675777-8675809)
chr7 (57-121)||(28342758-28342822)
chr7 (57-121)||(29614489-29614553)
chr7 (57-121)||(39784554-39784618)
[»] scaffold0573 (1 HSPs)
scaffold0573 (38-122)||(8837-8921)
[»] scaffold1128 (1 HSPs)
scaffold1128 (56-122)||(940-1006)
[»] scaffold1504 (1 HSPs)
scaffold1504 (56-121)||(1314-1379)
[»] scaffold0042 (1 HSPs)
scaffold0042 (56-124)||(57750-57818)
[»] scaffold0013 (1 HSPs)
scaffold0013 (57-121)||(89280-89344)
[»] scaffold0543 (1 HSPs)
scaffold0543 (56-121)||(10972-11037)
[»] scaffold0110 (1 HSPs)
scaffold0110 (56-88)||(39357-39389)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 27 - 473
Target Start/End: Complemental strand, 1833837 - 1833386
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcagga 126  Q
    ||||||| |||||| |||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |    
T  1833837 caatgttccacaaaccgagtgttaactcgtcgagtttacgtttttaggtaacaaaatcgtgtcaatttggaggtaaattcgatttctggtaaaataagaa 1833738  T
Q  127 tgtttatcgagtt-----------aattcagtcaaactcgataaactcaggtaaaatcggataaactcaagtaaaattggaatgttaatctaannnnnnn 215  Q
    |||||||||||||           |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||           
T  1833737 tgtttatcgagtttgactcgagttaattcagtcaaactcgataaactcaggtaaaatcgggtaaactcgagtaaaatcggaatgttaatctaatt----- 1833643  T
Q  216 naaggtaagataaattctcgagttgtaaaaccttgatctccagagagcagcctggtacatacttctatcatggacactaggtatgcagagagcagcaggg 315  Q
     ||||||||||||| |||||| |||||||||||| ||| | |||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||    
T  1833642 -aaggtaagataaactctcgaattgtaaaacctttatcgctagagagcagcatgatacatacttctatcatggacactaggtatgcagagagcacctggg 1833544  T
Q  316 ttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttcattatgatggtgagttcaacctgctccttagtgatctgtggcacacaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1833543 ttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttgattatgatggtgagttcaacctgctccttagtgatctgtggcacacaa 1833444  T
Q  416 gttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaacc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1833443 gttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaacc 1833386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 15926349 - 15926443
Alignment:
Q  28 aatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||| |||||||||| |||||| | | ||||||||||||||| ||||||||||||||||||| | |||||| || ||||||||| ||||||||    
T  15926349 aatgttccacaaatcgaatgttaactcgtcgagtttacgttttttggtaccaaaatcgtgtcaactcggaggttaactcgatttctggtaaaatc 15926443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 32242329 - 32242225
Alignment:
Q  35 cacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatc 134  Q
    ||||||||||||||||| | || |||||||| |||| || |||||||||||||| || |  |||||||| | |||||||||||||||||| ||||||| |    
T  32242329 cacaaatcgagtgttaattcgctgagtttacattttgagataccaaaatcgtgttaactctgaggtaaacttgatttcttgtaaaatcagaatgtttaac 32242230  T
Q  135 gagtt 139  Q
    |||||    
T  32242229 gagtt 32242225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 43617746 - 43617829
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatt 110  Q
    ||||||| |||||||| ||| |||| | | ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||    
T  43617746 caatgttccacaaatcaagtattaattcgtcgagtttacgtttataggtaccaaaattgtgtcaatttggaggtaaatttgatt 43617829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 32293883 - 32293986
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcagga 126  Q
    ||||||| ||||||||||||||||| | || |||||||||||||| |||||||||||||||| || |  || ||||| | |||||||||||||||| | |    
T  32293883 caatgttccacaaatcgagtgttaactcgctgagtttacgttttt-ggtaccaaaatcgtgttaaatctgatgtaaactggatttcttgtaaaatcggaa 32293981  T
Q  127 tgttt 131  Q
    |||||    
T  32293982 tgttt 32293986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 35404457 - 35404356
Alignment:
Q  20 tcatcaacaatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaa 119  Q
    |||||| ||||||| | ||||||||||||||| |   |||||||||||||||||||||| ||||||||| || || |||||||| ||| ||| | |||||    
T  35404457 tcatcaccaatgttacgcaaatcgagtgttaactcttcgagtttacgtttttaggtaccgaaatcgtgttaacttagaggtaaactcggtttttggtaaa 35404358  T
Q  120 at 121  Q
    ||    
T  35404357 at 35404356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 13833172 - 13833105
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    ||||||||||||||||||||| |||||||||| || |  |||||||| || |||||| ||||||||||    
T  13833172 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcaatttctagtaaaatcag 13833105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 32258414 - 32258367
Alignment:
Q  38 aaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcg 85  Q
    |||||||||||||| |||| |||||||||||||||| |||||||||||    
T  32258414 aaatcgagtgttaacttgctgagtttacgtttttagataccaaaatcg 32258367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 2308811 - 2308749
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatca 123  Q
    |||||||||||| ||||||||||||||| || | ||||||||||||| ||| | |||||||||    
T  2308811 tttacgtttttatgtaccaaaatcgtgttaactcggaggtaaattcggtttgtggtaaaatca 2308749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 10657878 - 10657943
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||||||| | |||||||    
T  10657878 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttttggtaaaat 10657943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 30850271 - 30850334
Alignment:
Q  60 gtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatca 123  Q
    |||||||||||||||| |||||||||| | || | ||||||||||||| ||| | |||||||||    
T  30850271 gtttacgtttttaggtgccaaaatcgtataaactcggaggtaaattcgttttttggtaaaatca 30850334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 18900030 - 18899964
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  18900030 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatc 18899964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 25288611 - 25288677
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| ||||||||    
T  25288611 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatc 25288677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 33136064 - 33136130
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||| |||||||||||| |||||||||| || |  |||||||| ||||||||| ||| ||||    
T  33136064 ccgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctggtataatc 33136130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 15224234 - 15224295
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||| |||||||||||||||||||| || |  |||||||| ||||||||| || |||||    
T  15224234 tttacgtgtttaggtaccaaaatcgtgttaactcagaggtaaactcgatttctggtgaaatc 15224295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 28740048 - 28739983
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| |||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  28740048 ccgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 28739983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 40829635 - 40829700
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||| ||| |||||||||| ||||||||||| || | ||||||||| ||| ||||| |||||||    
T  40829635 ccgagtctacatttttaggtatcaaaatcgtgttaactcggaggtaaactcggtttctggtaaaat 40829700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 215011 - 214979
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    |||| ||||||||||||||||||||||||||||    
T  215011 ccgaatttacgtttttaggtaccaaaatcgtgt 214979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 7027352 - 7027416
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  7027352 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 7027416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 18177720 - 18177784
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  18177720 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 18177784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 5e-88; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 262 - 473
Target Start/End: Original strand, 35505894 - 35506106
Alignment:
Q  262 gcagcctggtacatacttctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgag 360  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||||| |||    
T  35505894 gcagcctggtacatatttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagaaccaaagagag 35505993  T
Q  361 ccatttcattatgatggtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagat 460  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35505994 ccatttcattaagatggtgagttcaatctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagat 35506093  T
Q  461 ggattggtgaacc 473  Q
    |||||||||||||    
T  35506094 ggattggtgaacc 35506106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 262 - 473
Target Start/End: Original strand, 35523290 - 35523502
Alignment:
Q  262 gcagcctggtacatacttctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgag 360  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||||| |||    
T  35523290 gcagcctggtacatatttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagaaccaaagagag 35523389  T
Q  361 ccatttcattatgatggtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagat 460  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35523390 ccatttcattaagatggtgagttcaaactgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagat 35523489  T
Q  461 ggattggtgaacc 473  Q
    |||||||||||||    
T  35523490 ggattggtgaacc 35523502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 268 - 473
Target Start/End: Original strand, 35535718 - 35535924
Alignment:
Q  268 tggtacatacttctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccattt 366  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | ||||||||||||| |||||| |||||||||    
T  35535718 tggtacatatttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagagccaaagagagccattt 35535817  T
Q  367 cattatgatggtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattg 466  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35535818 cattacgatggtgagttcaatctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattg 35535917  T
Q  467 gtgaacc 473  Q
    |||||||    
T  35535918 gtgaacc 35535924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 25049841 - 25049945
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcagga 126  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||| | |    
T  25049841 caatgttccacaaatcgagtgttaactcgccgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgatttctagtaaaatcggaa 25049940  T
Q  127 tgttt 131  Q
    |||||    
T  25049941 tgttt 25049945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 48379596 - 48379662
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||||| |||||||||| ||||  |||||||| ||||||||| ||||||||    
T  48379596 ccgagtttacgtttttaggtacaaaaatcgtgttaattctgaggtaaactcgatttctggtaaaatc 48379662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 4962832 - 4962767
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||  ||||||||    
T  4962832 cgagtttacgtttttaggtatcaaaatcgtgttaacttggaggtaaactcgatttcaagtaaaatc 4962767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 21386586 - 21386520
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||| |||||||||| ||||||||||| || || |||||||| ||||||||| ||||||||    
T  21386586 ccgagtttacatttttaggtatcaaaatcgtgttaacttagaggtaaactcgatttctggtaaaatc 21386520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 33693255 - 33693323
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    ||||||||| | |||||  |||||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  33693255 ccgagtttatgattttacataccaaaatcgtgttaacttggaggtaaactcgatttctggtaaaatcag 33693323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 7665593 - 7665656
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||||||||| |||||||||||||| || | ||||||||| ||||||| | ||||||||    
T  7665593 agtttacgtttttagctaccaaaatcgtgttaactcggaggtaaactcgatttttggtaaaatc 7665656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 43172927 - 43172992
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||| || ||||||||||||||||||||  | | ||||||||| ||||||||| ||||||||    
T  43172927 cgagtttatgtgtttaggtaccaaaatcgtgttgactcggaggtaaactcgatttctggtaaaatc 43172992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 54629297 - 54629354
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttct 113  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| |||||||||    
T  54629297 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttct 54629354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 22489615 - 22489503
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcagga 126  Q
    ||||||| ||||||||| |||| || | | ||||||||||| ||||||| |||||| ||||| || |  || ||||| ||||||||| |||||||| | |    
T  22489615 caatgttccacaaatcgtgtgtcaactcgacgagtttacgtgtttaggtgccaaaaacgtgttaaatcagatgtaaactcgatttctggtaaaatcggaa 22489516  T
Q  127 tgtttatcgagtt 139  Q
     ||||| ||||||    
T  22489515 ggtttaacgagtt 22489503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 44905609 - 44905541
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    ||||||||||||| |||||||| |||||||||| ||||  |||||||  ||| ||||| ||||||||||    
T  44905609 ccgagtttacgttcttaggtacaaaaatcgtgttaattctgaggtaatctcggtttctggtaaaatcag 44905541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 8598658 - 8598724
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  8598658 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatc 8598724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 17946675 - 17946757
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||||||||||||||| |||||| ||| || |  |||||||| ||| ||||| |||||||| | | ||||| ||||||    
T  17946675 cgagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtt 17946757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 20833344 - 20833426
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||||||||||||||| |||||||||| || |  |||||||| ||  ||||| |||||||| | | ||||| ||||||    
T  20833344 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcagtttctggtaaaatcggaaggtttaacgagtt 20833426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 26107776 - 26107858
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||||||||||||||| |||||| ||| || |  |||||||| ||||||||| ||| |||| | | ||||| ||||||    
T  26107776 cgagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaactcgatttctggtacaatcggaaggtttaacgagtt 26107858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 49296115 - 49296181
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  49296115 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatc 49296181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 51737440 - 51737358
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||| | | ||||| ||||||    
T  51737440 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcggaaggtttaacgagtt 51737358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 52617721 - 52617643
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||| | | ||||| ||||||    
T  52617721 tttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtt 52617643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 53835961 - 53836027
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || ||||||||||| | ||||||| ||||||||    
T  53835961 ccgagtttacgtgtttaggtgctaaaaacgtgttaacttggaggtaaacttgatttctggtaaaatc 53836027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 31646015 - 31645950
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||| |||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  31646015 ccgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 31645950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 37455293 - 37455358
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||| |||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  37455293 ccgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 37455358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 40064277 - 40064326
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaatt 105  Q
    ||||||||||||||||||||  ||||| ||||| || |||||||||||||    
T  40064277 ccgagtttacgtttttaggtggcaaaaacgtgtaaacttggaggtaaatt 40064326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 50761854 - 50761797
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttct 113  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| | |||||||    
T  50761854 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatagatttct 50761797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 16155163 - 16155195
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    |||| ||||||||||||||||||||||||||||    
T  16155163 ccgaatttacgtttttaggtaccaaaatcgtgt 16155195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 50903062 - 50902998
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||||||||| |||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  50903062 cgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaat 50902998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 37131417 - 37131313
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcagga 126  Q
    ||||||| ||||||||||||||||| | | ||||||||| ||||||||||||||||||||||||| | ||||||||| |||| |||| |||||||||| |    
T  37131417 caatgttccacaaatcgagtgttaactcgtcgagtttacatttttaggtaccaaaatcgtgtcaactcggaggtaaactcgacttctggtaaaatcagaa 37131318  T
Q  127 tgttt 131  Q
    |||||    
T  37131317 tgttt 37131313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 24067087 - 24067180
Alignment:
Q  38 aaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgttt 131  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||| || || |||||| |||||||| | ||||||    
T  24067087 aaattgagtgttaactcgccgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtgaactcaatttctggtaaaatcggcatgttt 24067180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 17234716 - 17234788
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgttt 131  Q
    ||||| |||||||||||||||||||| | |||| | ||||||||| ||||||||| |||||||| | ||||||    
T  17234716 agtttgcgtttttaggtaccaaaatcctatcaactcggaggtaaactcgatttctggtaaaatcggaatgttt 17234788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 32497989 - 32498055
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| ||||||||    
T  32497989 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatc 32498055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 8029941 - 8029876
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||||| |||||||||||||||||||| || |  ||| |||| ||||||||| ||||||||    
T  8029941 cgagtttacgtgtttaggtaccaaaatcgtgttaactctgagataaactcgatttctggtaaaatc 8029876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 9288247 - 9288182
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  9288247 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 9288182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 27878755 - 27878670
Alignment:
Q  37 caaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||    |||| | ||||| |||||||||||||||||||| || | ||| ||||||||| ||||| ||||||||    
T  27878755 caaatcgagtgttaacactccgaatatacgtgtttaggtaccaaaatcgtgttaactcggatgtaaattcggtttctggtaaaatc 27878670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 28018936 - 28018851
Alignment:
Q  37 caaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||    |||| | ||||| |||||||||||||||||||| || | ||| ||||||||| ||||| ||||||||    
T  28018936 caaatcgagtgttaacactccgaatatacgtgtttaggtaccaaaatcgtgttaactcggatgtaaattcggtttctggtaaaatc 28018851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 41393958 - 41394002
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaa 103  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||    
T  41393958 agtttacgtttttaggtatcaaaatcgtgttaattcggaggtaaa 41394002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 10295092 - 10295009
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    |||||||||||||||||||||| | |||||||| || |  |||||||| ||| ||||| |||||||| | | ||||| ||||||    
T  10295092 ccgagtttacgtttttaggtacaacaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtt 10295009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 16364159 - 16364237
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||||||||||| |||||||||| || |   ||||||||||| ||||| |||||||| | | ||||| ||||||    
T  16364159 tttacgtttttaggtacaaaaatcgtgttaactctaaggtaaattcggtttctagtaaaatcggaaggtttaacgagtt 16364237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 7760809 - 7760874
Alignment:
Q  58 gagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatca 123  Q
    |||||||  |||||||||| |||||||||||||| | | ||||||||| |||||||  ||||||||    
T  7760809 gagtttatatttttaggtatcaaaatcgtgtcaactcgaaggtaaatttgatttctgataaaatca 7760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 12522520 - 12522491
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgt 88  Q
    ||||||||||||||||||||||||||||||    
T  12522520 agtttacgtttttaggtaccaaaatcgtgt 12522491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 18305729 - 18305664
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||| |||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  18305729 ccgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 18305664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 19717627 - 19717562
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  19717627 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 19717562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 43166429 - 43166397
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    |||||||||||||||||||||| ||||||||||    
T  43166429 ccgagtttacgtttttaggtacaaaaatcgtgt 43166397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 13461343 - 13461447
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcagga 126  Q
    ||||||| ||||||||||||||||| | || ||||||||||||||| ||| |||||||||||||| | ||||||||| ||| ||| | |||||||||| |    
T  13461343 caatgttccacaaatcgagtgttaactcgctgagtttacgtttttatgtatcaaaatcgtgtcaactcggaggtaaactcggtttttggtaaaatcagaa 13461442  T
Q  127 tgttt 131  Q
    |||||    
T  13461443 tgttt 13461447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 16438706 - 16438771
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||| |||| |||| ||||||||    
T  16438706 cgagtttacgtttttaggtacaaaaatcgtgttaacttggaggtaaactcgacttctggtaaaatc 16438771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 28900957 - 28900873
Alignment:
Q  38 aaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||| |  |||||||||| | |||||||||||||||||||| || |  |||||||| ||||||||| ||||||||    
T  28900957 aaatcgagtgttaactctccgagtttacatgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatc 28900873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 31975751 - 31975687
Alignment:
Q  58 gagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||| || |||||||||||||||||||| || |  |||||||| ||||||||||||||||||    
T  31975751 gagtttatgtgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttcttgtaaaatc 31975687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 3000244 - 3000314
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgttt 131  Q
    ||||||| |||||||||||||||||||| || | || |||||||||||||| | |||||||| ||| ||||    
T  3000244 tttacgtgtttaggtaccaaaatcgtgttaactcgggggtaaattcgatttatggtaaaatcgggaagttt 3000314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 1463772 - 1463706
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  1463772 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatc 1463706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 2606896 - 2606962
Alignment:
Q  58 gagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    |||||||||| |||||| ||||||||||| | || |  |||||||| ||||||||| ||||||||||    
T  2606896 gagtttacgtgtttaggcaccaaaatcgttttaactctgaggtaaactcgatttctggtaaaatcag 2606962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 6788099 - 6788165
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  6788099 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatc 6788165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 7497548 - 7497610
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  7497548 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaat 7497610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 14262187 - 14262125
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||| ||||||||||| |||||||||| || |  |||||||| ||||||||| |||||||    
T  14262187 agtttacttttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttctggtaaaat 14262125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 31067880 - 31067944
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  31067880 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 31067944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 33138771 - 33138865
Alignment:
Q  28 aatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||| | ||||||||||||||| |  |||||||||||| |||||||||||||||||||| || | ||||||||| ||||||||| ||||||||    
T  33138771 aatgttccgcaaatcgagtgttaactctccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatc 33138865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 50517163 - 50517257
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||| | ||||||||||||||| |  |||||||||||| |||||||||||||||||||| || || |||||||| ||||||||| |||||||    
T  50517163 caatgttccgcaaatcgagtgttaactctccgagtttacgtgtttaggtaccaaaatcgtgttaactttgaggtaaactcgatttctggtaaaat 50517257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 24966651 - 24966558
Alignment:
Q  28 aatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||| ||||||||||||||| |  |||||||||||| |||||||||||||||||||| || | ||| ||||||||| ||| | |||||||    
T  24966651 aatgtttcgcaaatcgagtgttaactctccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaagtaaattcggtttttggtaaaat 24966558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 871809 - 871883
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgttt 131  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||||| |||||||| | ||||||    
T  871809 ccgagtttacgtttttaggtaccaaa-tcgtgtcaactcggaggtaaactcgatttctggtaaaatcggaatgttt 871883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 46286679 - 46286740
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    ||||||| | ||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  46286679 caatgttccgcaaatcgagtgttaactctccgagtttacgtttttaggtaccaaaatcgtgt 46286740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 26491243 - 26491159
Alignment:
Q  40 atcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    |||||||||||| |  | |||||||||| |||||||||||||||||||| || || |||||||| ||| ||||| ||||||||||    
T  26491243 atcgagtgttaactctctgagtttacgtgtttaggtaccaaaatcgtgttaaatttgaggtaaactcggtttctggtaaaatcag 26491159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 46863048 - 46862953
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||| | |||||| |||||||| || |||||||||||| ||||||||| ||||| |||| || |  || ||||||||||||||| ||||||||    
T  46863048 caatgttccgcaaatcaagtgttaattttccgagtttacgtgtttaggtactaaaattgtgttaactatgaagtaaattcgatttctggtaaaatc 46862953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 32322514 - 32322580
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||||| |||||||||| ||||  |||||||| ||| ||||| ||||||||    
T  32322514 ccgagtttacgtttttaggtacaaaaatcgtgttaattctgaggtaaactcggtttctggtaaaatc 32322580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 55165526 - 55165599
Alignment:
Q  58 gagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgttt 131  Q
    ||||||||||||||| ||||||||||||| | || ||||||||||| | ||||| | |||||||||| ||||||    
T  55165526 gagtttacgtttttacgtaccaaaatcgtattaacttggaggtaaacttgatttatggtaaaatcagaatgttt 55165599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 32889895 - 32889963
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    |||||||||||| |||||||||||||||||||| || || || ||||| || |||||| ||||||||||    
T  32889895 ccgagtttacgtgtttaggtaccaaaatcgtgttaactttgatgtaaactcaatttctggtaaaatcag 32889963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 41725564 - 41725644
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||||||||||||| |||||||||| || |  |||||||| ||||||||| |||||||| | | ||||| ||||||    
T  41725564 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttaacgagtt 41725644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 42937544 - 42937449
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||||| || | |  |||||||||| ||||||| | |||| ||| | || | ||||||||| ||||||||| ||||||||    
T  42937544 caatgtttcacaaatcgagtgtcaactcggtgagtttacgtatttaggtgctaaaagcgttttaactcggaggtaaactcgatttctggtaaaatc 42937449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 49501286 - 49501203
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||| | | ||||| ||||||    
T  49501286 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtt 49501203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 49507351 - 49507268
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||| | | ||||| ||||||    
T  49507351 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtt 49507268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 5800413 - 5800495
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||||||| ||||| |||| ||||| | ||||| ||||||    
T  5800413 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcggtttctggtaacatcagaaggtttaacgagtt 5800495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 12754489 - 12754538
Alignment:
Q  28 aatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtac 77  Q
    |||||| | ||||||||||||||| | |||||||||||||||||||||||    
T  12754489 aatgttccgcaaatcgagtgttaactcgccgagtttacgtttttaggtac 12754538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 23671473 - 23671412
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||| |||||||||||||||||||| || | ||||||||| ||||||||| || |||||    
T  23671473 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaatc 23671412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 29855964 - 29856029
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||||||||||| |||| |||||||||| || |  |||||||| ||||||||| |||||||    
T  29855964 ccgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaat 29856029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 2326760 - 2326700
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||||||||||||||||||||| || ||||| ||||| | | ||||| |||||||    
T  2326760 tttacgtttttaggtaccaaaatcgtgtaaacttggatgtaaacttgttttctagtaaaat 2326700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 49834587 - 49834504
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    |||||||||||||||||| ||| |||||||||| || |  |||||||| ||| ||||| |||||||| | | ||||| ||||||    
T  49834587 ccgagtttacgtttttagctacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtt 49834504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 8084208 - 8084274
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  8084208 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatc 8084274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 29469162 - 29469228
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  29469162 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatc 29469228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 14334393 - 14334422
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcg 85  Q
    ||||||||||||||||||||||||||||||    
T  14334393 ccgagtttacgtttttaggtaccaaaatcg 14334422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 23987645 - 23987694
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaatt 105  Q
    |||||||||||||||||||||| |||||||||| || |  ||||||||||    
T  23987645 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaatt 23987694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 5441851 - 5441915
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  5441851 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 5441915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 27768513 - 27768577
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  27768513 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 27768577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 30967096 - 30967064
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    |||||||||||||||||||||| ||||||||||    
T  30967096 ccgagtttacgtttttaggtacaaaaatcgtgt 30967064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 54341591 - 54341655
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  54341591 cgagtttacatttttaggtacaaaaatcgtgtaaactctgaggtaaaatcggtttctggtaaaat 54341655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 52182347 - 52182412
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||    
T  52182347 cgagtttacgtttttaggtactgaaatcgtgtcaattcggaggtaaattcgatttctggtaaaatc 52182412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 3593234 - 3593332
Alignment:
Q  24 caacaatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||| | ||||||||||||||| |  |||||||||  |||||||||| ||||||||||| || | |||||||||||||||||||  |||||||    
T  3593234 caacaatgttccgcaaatcgagtgttaactctccgagtttatatttttaggtatcaaaatcgtgttaactcggaggtaaattcgatttctaataaaatc 3593332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 49971697 - 49971631
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||| ||||||||    
T  49971697 ccgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgttttctggtaaaatc 49971631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 5494849 - 5494781
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    ||||||||||||||||||||||||||||||||| || |  |||||||| ||| ||||| ||||||||||    
T  5494849 ccgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcag 5494781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 32760229 - 32760117
Alignment:
Q  27 caatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcagga 126  Q
    ||||||| | |||||||||||||||    | ||||||||||||||||||||||||||||||| || |  |||||||| ||| ||||| |||||||| |||    
T  32760229 caatgttccgcaaatcgagtgttaacactctgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcggga 32760130  T
Q  127 tgtttatcgagtt 139  Q
     | ||| ||||||    
T  32760129 ggcttaacgagtt 32760117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 47371675 - 47371610
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||  ||||||||||||||||||| || | ||||||||| ||||||||| ||||||||    
T  47371675 cgagtttacgtacttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatc 47371610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 8140983 - 8140919
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||||||||||||||| |||||||||| || |  |||||||| ||||||||| |||||||    
T  8140983 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttctggtaaaat 8140919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 28404045 - 28403981
Alignment:
Q  58 gagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||| |||||||||||||||||||||| || ||| ||||||||||| |||||  |||||||    
T  28404045 gagtttacatttttaggtaccaaaatcgtgttaacttgaaggtaaattcggtttctaataaaatc 28403981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 25253513 - 25253576
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaa 119  Q
    ||||||||| ||||||||||||||||||||||| |||   |||||||||||| ||||| |||||    
T  25253513 ccgagtttatgtttttaggtaccaaaatcgtgttaatactgaggtaaattcggtttctggtaaa 25253576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 3583657 - 3583591
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||||||||||||||||| ||||||||| || || || ||||| ||| ||||| ||||||||    
T  3583657 ccgagtttacgtttttaggtaccgaaatcgtgttaacttagaagtaaactcggtttctagtaaaatc 3583591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 11579232 - 11579135
Alignment:
Q  25 aacaatgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||| |||||||||  ||| || | | ||||||||||| ||||||| | |||| ||||| || | ||||||||||| ||||||| ||||||||    
T  11579232 aacaatgttccacaaatcgcatgtcaactcggcgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaatttgatttctggtaaaatc 11579135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 15834785 - 15834720
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||| ||||||||||| |||||||||| || |  |||||||||||||||| | |||||||    
T  15834785 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcgatttttggtaaaat 15834720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 35177306 - 35177245
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||| ||||||||||||||||||||||| ||||  |||||||| |||||||||  |||||||    
T  35177306 tttatgtttttaggtaccaaaatcgtgttaattcagaggtaaactcgatttctgataaaatc 35177245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 9192044 - 9192112
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||||    
T  9192044 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcag 9192112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 5209464 - 5209401
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    ||||||| |||||||||||||||||||| || | |||||| || ||||||||| || |||||||    
T  5209464 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtcaactcgatttctggtgaaatcag 5209401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 46328433 - 46328516
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||| |||||  ||||||| | | ||||| ||||||    
T  46328433 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctgttaaaatcggaaggtttaacgagtt 46328516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 4005087 - 4005153
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  4005087 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatc 4005153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 27257954 - 27257924
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaa 91  Q
    |||||||||||||||||||||||||||||||    
T  27257954 tttacgtttttaggtaccaaaatcgtgtcaa 27257924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 8147337 - 8147402
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| |||||||    
T  8147337 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaat 8147402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 18798899 - 18798964
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  18798899 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 18798964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 45273015 - 45273080
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||||||||||||||| ||||| |||| || |  |||||||| ||| ||||| ||||||||    
T  45273015 cgagtttacgtttttaggtacaaaaattgtgttaactctgaggtaaactcggtttctggtaaaatc 45273080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 6313024 - 6313088
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  6313024 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 6313088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 9322258 - 9322194
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  9322258 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 9322194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 25612540 - 25612604
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  25612540 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 25612604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 25831000 - 25830968
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    |||||||||||||||||||||| ||||||||||    
T  25831000 ccgagtttacgtttttaggtacaaaaatcgtgt 25830968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 29396184 - 29396120
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  29396184 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 29396120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 16548946 - 16548881
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||| || |||||| ||||||||    
T  16548946 cgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcaatttctggtaaaatc 16548881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 34218471 - 34218536
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    ||||||||||||||| |||||||||||||| |||| | ||||||||||| |||||  |||||||||    
T  34218471 agtttacgtttttagataccaaaatcgtgttaattcgaaggtaaattcggtttctgctaaaatcag 34218536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 21489904 - 21490015
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgttt--atcgagttaattcagtcaaactcgata 158  Q
    ||||| ||||||||||||||||||||||||||| | || |||| | ||||||| |||||||| | ||||||   |||||| || |  |||||||||| ||    
T  21489904 tttacatttttaggtaccaaaatcgtgtcaattcgaagataaacttgatttctggtaaaatctgaatgtttgactcgagtgaactaggtcaaactcggta 21490003  T
Q  159 aactcaggtaaa 170  Q
    ||||| ||||||    
T  21490004 aactcgggtaaa 21490015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 29716891 - 29716825
Alignment:
Q  58 gagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    ||||||||||||||||||| ||||||||||| || | | ||||||| | ||||||| ||||||||||    
T  29716891 gagtttacgtttttaggtatcaaaatcgtgttaactcgaaggtaaacttgatttctggtaaaatcag 29716825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 29758706 - 29758768
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaa 119  Q
    |||||||||||||||||||| ||||||||||| || | ||||||| ||| ||||||| |||||    
T  29758706 cgagtttacgtttttaggtatcaaaatcgtgttaactcggaggtagatttgatttctggtaaa 29758768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 5651284 - 5651232
Alignment:
Q  61 tttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttct 113  Q
    ||||||| |||||||||||||||||||| || | ||||||||| |||||||||    
T  5651284 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttct 5651232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 13926380 - 13926444
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  13926380 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 13926444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 1460900 - 1460834
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||||| ||||| |||| || |  |||||||| ||| ||||| ||||||||    
T  1460900 ccgagtttacgtttttaggtacaaaaattgtgttaactcagaggtaaactcggtttctggtaaaatc 1460834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 5949562 - 5949624
Alignment:
Q  59 agtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  5949562 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 5949624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 7125267 - 7125201
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  7125267 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatc 7125201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 4550012 - 4549947
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||||| ||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  4550012 ccgagtttacgtgtttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 4549947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 37014302 - 37014367
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  37014302 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 37014367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 39852819 - 39852883
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||||||| | |||||||    
T  39852819 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttttggtaaaat 39852883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 11735318 - 11735216
Alignment:
Q  29 atgtttcacaaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatg 128  Q
    ||||| |||||||||| |||||| |  | ||||||||| |||||||| |||||||||||| || | ||||||||| ||||||||| |||||||| | |||    
T  11735318 atgttccacaaatcgaatgttaactcactgagtttacgattttaggtcccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaatg 11735219  T
Q  129 ttt 131  Q
    |||    
T  11735218 ttt 11735216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 33497212 - 33497137
Alignment:
Q  38 aaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttct 113  Q
    |||||||||||||| |   ||||||||| |||||| ||| |||||||||||||| | ||||||||| |||||||||    
T  33497212 aaatcgagtgttaattcatcgagtttacatttttaagtatcaaaatcgtgtcaactcggaggtaaactcgatttct 33497137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 44121692 - 44121626
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||| ||||||||||||||||| |||||||||| || |  |||||||||||| ||||| ||||||||    
T  44121692 ccgaatttacgtttttaggtacaaaaatcgtgttaactatgaggtaaattcggtttctggtaaaatc 44121626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 44256513 - 44256431
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgtttatcgagtt 139  Q
    ||||||||||||||||| ||| |||||||||| || |  |||||||| ||||||||| |||||||| | | ||||| ||||||    
T  44256513 cgagtttacgtttttagatacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttaacgagtt 44256431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 12740816 - 12740881
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||||||||||||||||||||||||||| || |  |||||||| ||| | ||| |||||||    
T  12740816 ccgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtgtctggtaaaat 12740881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 37328354 - 37328419
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    ||||||||||||||||||||| |||||||||| || |   ||||||| ||||||||| ||||||||    
T  37328354 cgagtttacgtttttaggtacaaaaatcgtgttaactctaaggtaaactcgatttctggtaaaatc 37328419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 48136987 - 48136922
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||||||||||||||||||||||||||| || |  |||||||| ||  ||||| |||||||    
T  48136987 ccgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcagtttctggtaaaat 48136922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 37972636 - 37972604
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    |||||||||||||||||||||||||||||||||    
T  37972636 ccgagtttacgtttttaggtaccaaaatcgtgt 37972604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 42610616 - 42610684
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    |||| ||||||| |||||||||||||||||||| || || |||||||| | | ||||| ||||||||||    
T  42610616 ccgaatttacgtgtttaggtaccaaaatcgtgttaaatttgaggtaaacttggtttctggtaaaatcag 42610684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 16709434 - 16709465
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtg 87  Q
    ||||||||||||||||||||||||||||||||    
T  16709434 ccgagtttacgtttttaggtaccaaaatcgtg 16709465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 17683670 - 17683701
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtg 87  Q
    ||||||||||||||||||||||||||||||||    
T  17683670 ccgagtttacgtttttaggtaccaaaatcgtg 17683701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 26201930 - 26201891
Alignment:
Q  26 acaatgtttcacaaatcgagtgttaagttgccgagtttac 65  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  26201930 acaatgttccacaaatcgagtgttaacttgccgagtttac 26201891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 33383120 - 33383151
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtg 87  Q
    ||||||||||||||||||||||||||||||||    
T  33383120 ccgagtttacgtttttaggtaccaaaatcgtg 33383151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 14741425 - 14741491
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| ||||||| | |||| ||||| || | ||||||||| ||||||||| ||||||||    
T  14741425 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatc 14741491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 27148845 - 27148919
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcaggatgttt 131  Q
    |||||||||||||||||||| ||||||||||| || | ||||||||  || |||||   ||||||||| ||||||    
T  27148845 cgagtttacgtttttaggtatcaaaatcgtgttaaatcggaggtaacctcaatttcagctaaaatcagaatgttt 27148919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 29585960 - 29586026
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||  ||||||||    
T  29585960 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaagtcggtttcgggtaaaatc 29586026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 41827776 - 41827842
Alignment:
Q  58 gagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    |||||||||||||||||||| |||||||||| || |  |||||||| ||  ||||| ||||||||||    
T  41827776 gagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcagtttctggtaaaatcag 41827842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 18838856 - 18838921
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  18838856 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 18838921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 40460473 - 40460408
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||||| |||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  40460473 ccgagtttacgcttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 40460408  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 510093 - 510157
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  510093 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 510157  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 8675777 - 8675809
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    ||||||| |||||||||||||||||||||||||    
T  8675777 ccgagttaacgtttttaggtaccaaaatcgtgt 8675809  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 28342758 - 28342822
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  28342758 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 28342822  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 29614553 - 29614489
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  29614553 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 29614489  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 39784554 - 39784618
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    ||||||||| ||||||||||| |||||||||| || |  |||||||| ||| ||||| |||||||    
T  39784554 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 39784618  T

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Target: scaffold0573 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 8837 - 8921
Alignment:
Q  38 aaatcgagtgttaagttgccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||||| |  |||||||||| | |||||||||||||||||||| || |  |||||||| ||||||||| ||||||||    
T  8837 aaatcgagtgttaactctccgagtttacatgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatc 8921  T

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Target: scaffold1128 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 1006 - 940
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatc 122  Q
    |||||||||||| |||||||||||||||||||| || | ||||||||| ||| ||||| ||||||||    
T  1006 ccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcggtttctggtaaaatc 940  T

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Target: scaffold1504 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 1314 - 1379
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||| |||||||||||||    
T  1314 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttcttgtaaaat 1379  T

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Target: scaffold0042 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 57818 - 57750
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaatcag 124  Q
    |||||||||||||||||||||| |||||||||| || |  |||||||| ||| ||||| ||||||||||    
T  57818 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcag 57750  T

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Target: scaffold0013 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 89280 - 89344
Alignment:
Q  57 cgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||| ||||||||||||||| ||||||| || ||| ||||||| ||||||||| |||||||    
T  89280 cgagtttaagtttttaggtaccaatatcgtgttaacttgaaggtaaactcgatttctggtaaaat 89344  T

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Target: scaffold0543 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 10972 - 11037
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgtcaatttggaggtaaattcgatttcttgtaaaat 121  Q
    |||||||||| ||||||||||| |||||||||| || |  |||||||||||||||| | |||||||    
T  10972 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcgatttttggtaaaat 11037  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 39389 - 39357
Alignment:
Q  56 ccgagtttacgtttttaggtaccaaaatcgtgt 88  Q
    |||||||||||||||||||||||||||||||||    
T  39389 ccgagtttacgtttttaggtaccaaaatcgtgt 39357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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