View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10730_5 (Length: 435)

Name: NF10730_5
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10730_5
NF10730_5
[»] chr3 (8 HSPs)
chr3 (1-435)||(1900374-1900810)
chr3 (1-435)||(1909820-1910256)
chr3 (2-228)||(2934713-2934936)
chr3 (63-228)||(1893501-1893663)
chr3 (63-228)||(1902947-1903109)
chr3 (297-435)||(1893770-1893908)
chr3 (297-435)||(1903216-1903354)
chr3 (295-435)||(2934472-2934605)
[»] chr7 (1 HSPs)
chr7 (123-201)||(41497555-41497634)
[»] chr5 (1 HSPs)
chr5 (112-226)||(12260633-12260748)


Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 1900374 - 1900810
Alignment:
Q  1 aagatgaccggaagactgcaatgacttctatacaagacaagtgaagaaagttgttcaaagtcgttaagaggggtataaaaaaggtcacagggagaagacc 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  1900374 aagatgaccggaagactgcaatgacttctataaaagacaagtgaagaaagttgttcaacgttgttaagaggggtataaaaaaggtcacagggagaagacc 1900473  T
Q  101 aataagaaggatgttaagacctcaaatgagaattgggcccagatagacaactggctaatcagttgcacaagcccattagatgcagagtgatgttatcaaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1900474 aataagaaggatgttaagacctccaatgagaattgggcccagatagacaactggctaatcagttgcacaagcccattagatgcagagtgatgttatcaaa 1900573  T
Q  201 acatatgaaaggagaaggtaataataagacggtgaggaggagc--aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggagg 298  Q
    |||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1900574 acatatgaaaggagaaggtaataataagacggtgagggtgagcaaaaaggagagagggaagggctttagagagtcatctcttatctaggaggactggaga 1900673  T
Q  299 agcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatccat 398  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||| |    
T  1900674 agcttagctctgggcggtaggagtactggtcttctgtaattttcctttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgt 1900773  T
Q  399 taggttctgggttcctaacaggatatatggtaaatgg 435  Q
     ||||||||||||||||||||||||||||||||||||    
T  1900774 aaggttctgggttcctaacaggatatatggtaaatgg 1900810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 1909820 - 1910256
Alignment:
Q  1 aagatgaccggaagactgcaatgacttctatacaagacaagtgaagaaagttgttcaaagtcgttaagaggggtataaaaaaggtcacagggagaagacc 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  1909820 aagatgaccggaagactgcaatgacttctataaaagacaagtgaagaaagttgttcaacgttgttaagaggggtataaaaaaggtcacagggagaagacc 1909919  T
Q  101 aataagaaggatgttaagacctcaaatgagaattgggcccagatagacaactggctaatcagttgcacaagcccattagatgcagagtgatgttatcaaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1909920 aataagaaggatgttaagacctccaatgagaattgggcccagatagacaactggctaatcagttgcacaagcccattagatgcagagtgatgttatcaaa 1910019  T
Q  201 acatatgaaaggagaaggtaataataagacggtgaggaggagc--aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggagg 298  Q
    |||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1910020 acatatgaaaggagaaggtaataataagacggtgagggtgagcaaaaaggagagagggaagggctttagagagtcatctcttatctaggaggactggaga 1910119  T
Q  299 agcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatccat 398  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||| |    
T  1910120 agcttagctctgggcggtaggagtactggtcttctgtaattttcctttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgt 1910219  T
Q  399 taggttctgggttcctaacaggatatatggtaaatgg 435  Q
     ||||||||||||||||||||||||||||||||||||    
T  1910220 aaggttctgggttcctaacaggatatatggtaaatgg 1910256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 2934936 - 2934713
Alignment:
Q  2 agatgaccggaagactgcaatgacttctatacaagacaagtgaagaaagttgttcaaagtcgttaagaggggtataaaaaaggtcacagggagaagacca 101  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  2934936 agatgactggaaaactgcaatgacttctatacaagacaagtgaagaaaattgttcaacattgttaagaggggtataaaaaaggtcacagggagaagacca 2934837  T
Q  102 ataagaaggatgttaagacctcaaatgagaattgggcccagatagacaactggctaatcagttgcacaagcccattagatgcagagtgatgttatcaaaa 201  Q
    |||||   |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  2934836 ataag---gatgttaagacctcaaatgagaattgggcccaaatagacaattggcaaatcagttgcacaagcccattagatggagagtgatgttctcaaaa 2934740  T
Q  202 catatgaaaggagaaggtaataataag 228  Q
    |||| ||||| ||| || |||||||||    
T  2934739 cataggaaagaagagggaaataataag 2934713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 1893501 - 1893663
Alignment:
Q  63 gttaagaggggtataaaaaaggtcacagggagaagaccaataagaaggatgttaagacctcaaatgagaattgggcccagatagacaactggctaatcag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||| |||||||| |||||||||||    
T  1893501 gttaagaggggtataaaaaaggtcacagggagaagaccaataag---gatgttaagacctcaaatgagaattggacccaaatagacaattggctaatcag 1893597  T
Q  163 ttgcacaagcccattagatgcagagtgatgttatcaaaacatatgaaaggagaaggtaataataag 228  Q
    |||| |||||||| |||||| ||||||||||| |||||||||| ||||| ||| || |||||||||    
T  1893598 ttgcgcaagcccaatagatggagagtgatgttctcaaaacataggaaagaagagggaaataataag 1893663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 1902947 - 1903109
Alignment:
Q  63 gttaagaggggtataaaaaaggtcacagggagaagaccaataagaaggatgttaagacctcaaatgagaattgggcccagatagacaactggctaatcag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||| |||||||| |||||||||||    
T  1902947 gttaagaggggtataaaaaaggtcacagggagaagaccaataag---gatgttaagacctcaaatgagaattggacccaaatagacaattggctaatcag 1903043  T
Q  163 ttgcacaagcccattagatgcagagtgatgttatcaaaacatatgaaaggagaaggtaataataag 228  Q
    |||| |||||||| |||||| ||||||||||| |||||||||| ||||| ||| || |||||||||    
T  1903044 ttgcgcaagcccaatagatggagagtgatgttctcaaaacataggaaagaagagggaaataataag 1903109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 297 - 435
Target Start/End: Original strand, 1893770 - 1893908
Alignment:
Q  297 ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc 396  Q
    ||||||| |||||| || |||||||||||| ||    |||||||||||||||||||||| ||| ||||||||||||||  |||| ||||||||||| |||    
T  1893770 ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc 1893869  T
Q  397 attaggttctgggttcctaacaggatatatggtaaatgg 435  Q
     ||||||||||||| ||| ||||| ||||| ||||||||    
T  1893870 gttaggttctgggtccctgacaggctatattgtaaatgg 1893908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 297 - 435
Target Start/End: Original strand, 1903216 - 1903354
Alignment:
Q  297 ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc 396  Q
    ||||||| |||||| || |||||||||||| ||    |||||||||||||||||||||| ||| ||||||||||||||  |||| ||||||||||| |||    
T  1903216 ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc 1903315  T
Q  397 attaggttctgggttcctaacaggatatatggtaaatgg 435  Q
     ||||||||||||| ||| ||||| ||||| ||||||||    
T  1903316 gttaggttctgggtccctgacaggctatattgtaaatgg 1903354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 435
Target Start/End: Complemental strand, 2934605 - 2934472
Alignment:
Q  295 gaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttat 394  Q
    |||||||||  ||||| || |||||||||||| ||    |||||||||||||||| ||||||||| |||||||||       |||| ||||||||||| |    
T  2934605 gaggagctttcctctgggcagtaggagtaccgttcaacggtaattttcctttttcataaataatacattccattt-------gttgctgtgttattttct 2934513  T
Q  395 ccattaggttctgggttcctaacaggatatatggtaaatgg 435  Q
    || ||||||||| ||| ||||||||| || || ||||||||    
T  2934512 ccgttaggttctaggtccctaacaggctacattgtaaatgg 2934472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 41497555 - 41497634
Alignment:
Q  123 caaatgagaatt-gggcccagatagacaactggctaatcagttgcacaagcccattagatgcagagtgatgttatcaaaa 201  Q
    |||||||||||| ||||| | ||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  41497555 caaatgagaatttgggcctaaataaacaattggctaatcagttgcacaagctcattagatgtagagtgatgttatcaaaa 41497634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 12260633 - 12260748
Alignment:
Q  112 tgttaagacctcaaatgagaat-tgggcccagatagacaactggctaatcagttgcacaagcccattagatgcagagtgatgttatcaaaacatatgaaa 210  Q
    ||||| |||||||||||||||| | |||||| | || ||| ||| |||||||||||||||| ||||||| || | || | ||||||||||| ||||||||    
T  12260633 tgttaggacctcaaatgagaatgtaggcccaaaaagtcaattggttaatcagttgcacaagtccattaggtggacagcggtgttatcaaaatatatgaaa 12260732  T
Q  211 ggagaaggtaataata 226  Q
     |||| || |||||||    
T  12260733 tgagagggaaataata 12260748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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