View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_6 (Length: 410)
Name: NF10730_6
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 10426932 - 10426677
Alignment:
| Q |
27 |
taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct |
126 |
Q |
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| T |
10426932 |
taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct |
10426833 |
T |
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| Q |
127 |
tggtagcttctcctatgtgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattga |
226 |
Q |
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| T |
10426832 |
tggtagcttctcctttgcgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattatttcagcacattggaattga |
10426733 |
T |
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| Q |
227 |
tcaatttgaatgatacacatgcctccaaggtcttatctagaatttacagggcttgct |
283 |
Q |
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| T |
10426732 |
tcaatttgaatgatacacatgcct-caaggtcttatctagaatttacagagcttgct |
10426677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 314 - 410
Target Start/End: Complemental strand, 10426336 - 10426240
Alignment:
| Q |
314 |
ttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcacctatcccattttcccttatccttccaccctgtttt |
410 |
Q |
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| T |
10426336 |
ttaattcaacgcttcatcgtaatatctccgttctccacattattctctccttttcttctcacctatcccattttcccttatccttccaccctatttt |
10426240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 61 - 262
Target Start/End: Original strand, 4410741 - 4410938
Alignment:
| Q |
61 |
atgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatccttggtagcttctcctatgtgcggctgaagacttat |
160 |
Q |
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| T |
4410741 |
atgcgctaatcttatcttaataaacataagttgcatcgtaaatgtaaggaaagttgaaaatatccttggtagcttctcctttgtgca----atgactgat |
4410836 |
T |
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| Q |
161 |
ctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattgatcaatttgaatgatacacatgcctccaaggtctt |
260 |
Q |
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| T |
4410837 |
ctgatgcatattttcaaatcctatcagcaccattgtatattaattaattcagcacattggaattgatcaatgtgaatggtacacatgcctccaaggtctt |
4410936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 4407898 - 4407926
Alignment:
| Q |
31 |
ttcattgctaccttcttaacatgtgactt |
59 |
Q |
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| T |
4407898 |
ttcattgctaccttcttaacatgtgactt |
4407926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 24819406 - 24819529
Alignment:
| Q |
288 |
gctattcttttcgtctttgttcctttttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcac-ctatcccattt |
386 |
Q |
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| T |
24819406 |
gctattcttttcctctctattcaattttaattcaacgctccatcgtaatatgttcagtctccacattattttctctttttcctctcactctatcgcatct |
24819505 |
T |
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| Q |
387 |
tcccttatccttccaccctgtttt |
410 |
Q |
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| T |
24819506 |
tccctcatccttccaccctatttt |
24819529 |
T |
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