View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_9 (Length: 321)
Name: NF10730_9
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_9 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 133 - 310
Target Start/End: Complemental strand, 34344262 - 34344084
Alignment:
| Q |
133 |
ttgaaacaaatacccaccacacacgttatctttccttcannnnnnnn-ggattcattgatttggtggaccatacaaatacacacatttcaacattttatt |
231 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34344262 |
ttgaaacaaatatccacaacacacgttatctttccttcatttttttttggattcattgatttggtggaccatacaaatacacacattagaacattttatt |
34344163 |
T |
|
| Q |
232 |
ttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344162 |
ttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttc |
34344084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34344394 - 34344309
Alignment:
| Q |
1 |
gaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaattgagacatgagcacatgggagtggcagagagtacagacca |
86 |
Q |
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| T |
34344394 |
gaaacaaccccgggcaaattgcaagcgggaaagttgaaatttaaattgagacaagagcagatggaagtggcagagagtacagacca |
34344309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18912956 - 18913001
Alignment:
| Q |
1 |
gaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaat |
46 |
Q |
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| T |
18912956 |
gaaacaacccctggtaaattgcaagcgggaaaattgaaattcaaat |
18913001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 18913128 - 18913197
Alignment:
| Q |
186 |
attgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaag |
255 |
Q |
| |
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||||| |||||||||| |||||||||||| || |||| || | ||||| |||||||||||||||||||| |
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| T |
18913128 |
attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaaag |
18913197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 133 - 305
Target Start/End: Complemental strand, 3017978 - 3017805
Alignment:
| Q |
133 |
ttgaaacaaatacccaccacacacgttatctttccttcannnnnnnng-gattcattgatttggtggaccatacaaatacacacatttcaacattttatt |
231 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3017978 |
ttgaaacaaatacccaccacacacattatctttccttcattttttttttgattcattgatttggtggaccatacaaatacacacattacaacattttatt |
3017879 |
T |
|
| Q |
232 |
ttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctt |
305 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017878 |
ttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctt |
3017805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 3018102 - 3018023
Alignment:
| Q |
1 |
gaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaattgagacatgagcacatgggagtggcagagagtac |
80 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
3018102 |
gaaacaacccctggcaaattgcaagcgggaaaattgaaacttaaattgagacatgagcacatgggagtggcagagagtac |
3018023 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 37278612 - 37278737
Alignment:
| Q |
185 |
cattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa |
284 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37278612 |
cattgatttggtggatcatacaaatacacacattacaacattttcttttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa |
37278711 |
T |
|
| Q |
285 |
agcttaccattcttccttcttccttc |
310 |
Q |
| |
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||||| |||||||||||| ||||||| |
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| T |
37278712 |
agcttgccattcttcctttttccttc |
37278737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 37278435 - 37278512
Alignment:
| Q |
1 |
gaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaattgagacatgagcacatgggagtggcagagagt |
78 |
Q |
| |
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||||||| || |||||| || ||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| |
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| T |
37278435 |
gaaacaatccttggcaatttataagcgggaaaattgaaatttaaatagagacaagagcacatgggagtggcagagagt |
37278512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 46420229 - 46420329
Alignment:
| Q |
210 |
acacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46420229 |
acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt |
46420328 |
T |
|
| Q |
310 |
c |
310 |
Q |
| |
|
| |
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|
| T |
46420329 |
c |
46420329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 46420089 - 46420155
Alignment:
| Q |
9 |
ccctggcaaattgcaagcgggaaaattgaaattgaaattgagacatgagcacatgggagtggcagag |
75 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46420089 |
ccctggcaaattgcaagcggaaaaattgaaatttaaattgagacatgagcacatgggagtggcagag |
46420155 |
T |
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