View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_low_1 (Length: 495)
Name: NF10730_low_1
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_low_1 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 8316451 - 8316925
Alignment:
| Q |
1 |
gcttcacaaaggaaatttgaaacaggatgatgctgaccagaatggtaatggaaatggagtcgcccatgcaaatggctccgcagcagttgctgatattttc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316451 |
gcttcacaaaggaaatttgaaacaggatgatgctgcccagaatggtaatggaaatggagtcgcccatgcaaatggctccgcagcagttgctgatattttc |
8316550 |
T |
|
| Q |
101 |
actacccagaacgtggtcagcttgagcagggctggaattgagaatctagctaaattggaggaccgaaaagaaccttggattgttgtgctctatgcaccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316551 |
actacccagaacgtggtcagcttgagcagggctggaattgagaatctagctaaattggaggaccgaaaagaaccttggattgttgtgctctatgcaccat |
8316650 |
T |
|
| Q |
201 |
ggtgccgcttctgtcaggtaaaatgatatgcctgaacttgcaatattgcctgaactttcaatattatgttaccattctcttactaaaggtgcattatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8316651 |
ggtgccgcttctgtcaggtaaaatgatatgcctgaacttgcaatattgcctgaactttcaatattatgttaccattctcttactaatggtgcattatttc |
8316750 |
T |
|
| Q |
301 |
atttgacttgaaatttcaattaataacatgtttttatcttaattcttacaggctatggaggaatcatacgtggatttggcagagaatttagcagggtcag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8316751 |
atttgacttgaaatttcaattaataacatg-ttttatcttaattcttacaggctatggaggaatcatacgtgaatttggcagagaatttagcagggtcag |
8316849 |
T |
|
| Q |
401 |
gagtgaaggttggaaaatttagagcggatggtgatgaaaaagaatacgcaaagagtgaactagggttgggaagctt |
476 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316850 |
gagtgaaggttggaaaatttagagcggatggtgatgaaaaagaatacgcaaagagtgaactagggttgggaagctt |
8316925 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 476
Target Start/End: Complemental strand, 7666 - 7208
Alignment:
| Q |
2 |
cttcacaaaggaaatttgaaacaggatgatgctgaccagaatggtaatggaaatggagtcgcccatgcaaatggctccgcagcagttgctgatattttca |
101 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||| ||| || || ||||| ||||| |
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| T |
7666 |
cttcataaaggtaatttgaaacaggatgatgctgcccaatatggtaatggaaacgaagtcgcccatgcaaatggctctgcaacaattactgattatttca |
7567 |
T |
|
| Q |
102 |
c--tacccagaacgtggtcagcttgagcagggctggaattgagaatctagctaaattggaggaccgaaaagaaccttggattgttgtgctctatgcacca |
199 |
Q |
| |
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| |||||| || ||||||||||||||| ||| |||||||| |||||||||||||||||| |||| |||||| || ||||| || ||||||||||| || |
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| T |
7566 |
ccatacccataatgtggtcagcttgagccgggttggaattgtgaatctagctaaattggatgaccaaaaagatccatggatcattatgctctatgcatca |
7467 |
T |
|
| Q |
200 |
tggtgccgcttctgtcaggtaaaatgatatgcctgaacttgcaatattgcctgaactttcaatattatgttaccattctcttactaaa-ggtgcattatt |
298 |
Q |
| |
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||||||| ||| ||||||||| |||||||||| || ||||||||||||||||||||| | |||||||||||| || |||||| | |
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| T |
7466 |
tggtgccacttttgtcaggtacaatgatatgc------------ta------gaactttcaatattatgttactactctcttactaaaaggagcattact |
7385 |
T |
|
| Q |
299 |
tcatttgacttgaaatttcaattaataacatgtttttatcttaattcttacaggctatggaggaatcatacgtggatttggcagagaatttagcagggtc |
398 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| | || |||||||||| |||||||||||||| || ||| |||||||||||||| |||||||||| |
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|
| T |
7384 |
tcattttacttgaaatttcaattaataacaagttta-acctaaattcttacatgctatggaggaatcgtatgtgaatttggcagagaatatagcagggtc |
7286 |
T |
|
| Q |
399 |
aggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaatacgcaaagagtgaactagggttgggaagctt |
476 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |
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| T |
7285 |
aggagtgaaggttgggaaatttatagcggatggtgatggaaaagaatatgcaaagagtgaactatggttgggaagctt |
7208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 476
Target Start/End: Complemental strand, 9325149 - 9324691
Alignment:
| Q |
2 |
cttcacaaaggaaatttgaaacaggatgatgctgaccagaatggtaatggaaatggagtcgcccatgcaaatggctccgcagcagttgctgatattttca |
101 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||| ||| || || ||||| ||||| |
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| T |
9325149 |
cttcataaaggtaatttgaaacaggatgatgctgcccaatatggtaatggaaacgaagtcgcccatgcaaatggctctgcaacaattactgattatttca |
9325050 |
T |
|
| Q |
102 |
c--tacccagaacgtggtcagcttgagcagggctggaattgagaatctagctaaattggaggaccgaaaagaaccttggattgttgtgctctatgcacca |
199 |
Q |
| |
|
| |||||| || ||||||||||||||| ||| |||||||| |||||||||||||||||| |||| |||||| || ||||| || ||||||||||| || |
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| T |
9325049 |
ccatacccataatgtggtcagcttgagccgggttggaattgtgaatctagctaaattggatgaccaaaaagatccatggatcattatgctctatgcatca |
9324950 |
T |
|
| Q |
200 |
tggtgccgcttctgtcaggtaaaatgatatgcctgaacttgcaatattgcctgaactttcaatattatgttaccattctcttactaaa-ggtgcattatt |
298 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||| || ||||||||||||||||||||| | |||||||||||| || |||||| | |
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| T |
9324949 |
tggtgccacttttgtcaggtacaatgatatgc------------ta------gaactttcaatattatgttactactctcttactaaaaggagcattact |
9324868 |
T |
|
| Q |
299 |
tcatttgacttgaaatttcaattaataacatgtttttatcttaattcttacaggctatggaggaatcatacgtggatttggcagagaatttagcagggtc |
398 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| | || |||||||||| |||||||||||||| || ||| |||||||||||||| |||||||||| |
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| T |
9324867 |
tcattttacttgaaatttcaattaataacaagttta-acctaaattcttacatgctatggaggaatcgtatgtgaatttggcagagaatatagcagggtc |
9324769 |
T |
|
| Q |
399 |
aggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaatacgcaaagagtgaactagggttgggaagctt |
476 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
9324768 |
aggagtgaaggttgggaaatttatagcggatggtgatggaaaagaatatgcaaagagtgaactatggttgggaagctt |
9324691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 247 - 475
Target Start/End: Complemental strand, 2236128 - 2235900
Alignment:
| Q |
247 |
tgcctgaactttcaatattatgttaccattctcttactaaaggtgcattatttcatttgacttgaaatttcaattaataacatgtttttatcttaattct |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
2236128 |
tgcctgaactttcaatattatgttaccattctcttataaaagctgcattacttcatttgacttgaaatttcaattaataacatgttta-atctaaattct |
2236030 |
T |
|
| Q |
347 |
tacaggctatggaggaatcatacgtg--gatttggcagagaatttagcagggtcaggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaa |
444 |
Q |
| |
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||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
2236029 |
tacaggctatggacgaatcatatgtgtggatttggcagagaacttagcagggtcaggagtgaaggttggaaaatttagagcggacggtgatggaaaagaa |
2235930 |
T |
|
| Q |
445 |
tacgcaaagagtgaactagggttgggaagct |
475 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |
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|
| T |
2235929 |
tgtgcaaagagtgaacta-ggttgggaagct |
2235900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 247 - 476
Target Start/End: Complemental strand, 34806174 - 34805947
Alignment:
| Q |
247 |
tgcctgaactttcaatattatgttaccattctcttactaaaggtgcattatttcatttgacttgaaatttcaattaataacatgtttttatcttaattct |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||| |||| | |||| |
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|
| T |
34806174 |
tgcctgaactttcaatattatgttaccattctcttataaaagctgcattacttcgtttgacttgaaatttcaattaataacatgttta-atctaatttct |
34806076 |
T |
|
| Q |
347 |
tacaggctatggaggaatcatacgtggatttggcagagaatttagcagggtcaggagtgaaggttggaaaatttagagcggatggtgatgaaaaagaata |
446 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |
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|
| T |
34806075 |
tacaggctatggaggaatcgtatgtggatttggcagagaacttagtagggtcaggagtgaaggttagaaaatttagagcggacggtgatggaaaagaatg |
34805976 |
T |
|
| Q |
447 |
cgcaaagagtgaactagggttgggaagctt |
476 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
34805975 |
tgcaaagagtgaacta-ggttgggaagctt |
34805947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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