View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_low_2 (Length: 452)
Name: NF10730_low_2
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 22041846 - 22042268
Alignment:
| Q |
16 |
actaaggattgtacctatagacatgaacaaatggacnnnnnnngccatcgaaaaacttgaaacggatagtgtctccatgttgaaattcattgttgttaca |
115 |
Q |
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| T |
22041846 |
actaaggattgttcctatagacatgaacaaatggactttttttgccatcgaaaaacttgaaacggatagtgtctcctagttgaaattcattgttgttaca |
22041945 |
T |
|
| Q |
116 |
gaatgtcttccaaccgtttttcaacttagtattcagcgattcattgctttggtattcaatttcagctataacaatcccttcattcagattcccattgcaa |
215 |
Q |
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||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22041946 |
aaatgtctcccaaccatttttcaacttagtattcagtgattcattgctttggtattcaatttcagctataacaatcccttcattcggattcccattgcaa |
22042045 |
T |
|
| Q |
216 |
aggaaaagacaatcgaaatcaccatcccataagaagtcattgaagtcgggtggcagaacttgtaattgttagaatatgtattttagaacttgtgggaaaa |
315 |
Q |
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| T |
22042046 |
aggaaaagacaatcgaaatcatcatcccataagaagtcattgaagtcgggtggcagaacctgtaattgttagaacatatattttataacttgtgggaaaa |
22042145 |
T |
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| Q |
316 |
gcacataatttggttagaaatataggaagatattaaaaagaaatgttaccaattcagatcttactgccttctgcaaattagtcaaagtgatgtcnnnnnn |
415 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
22042146 |
gcatataatttggttagaaatataggaagatattaaaaagaaattttaccaattcagatcttactgccatctgcaaattactcaaagtgatgtcaaaaaa |
22042245 |
T |
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| Q |
416 |
ntatgatttacggtttggtagtt |
438 |
Q |
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|||||||||||||| ||||||| |
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| T |
22042246 |
atatgatttacggttcggtagtt |
22042268 |
T |
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