View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_low_3 (Length: 281)
Name: NF10730_low_3
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 38931690 - 38931946
Alignment:
| Q |
18 |
aaaacatgaagcatcactccatgtttcaggatctctttgaatggcccatgcattaatcaaaactatcgtgtcacgtggaatagtaaatccttcaatattg |
117 |
Q |
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| T |
38931690 |
aaaacatgaagcatcactccatgtttcaggatctctttgaatggcccatgcattaatcaaaactatcgtgtcacgtggaatagtaaatccttcaatattg |
38931789 |
T |
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| Q |
118 |
cactcgtttgaagaaaaacgaggcaataataatggagctggagagtacaaccgaagtgtctcgtagataatgttttgaatgtaaggaagatttggaatgt |
217 |
Q |
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| T |
38931790 |
cactcgtttgaagaaaaacgaggcaataataatggagctggagagtacaaccgaagtgtctcgtagataatgttttgaatgtaagaaagatttggaatgt |
38931889 |
T |
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| Q |
218 |
ctgactcttctaccaaacgatcataccctatttgagtgttcagttcatcctttgctt |
274 |
Q |
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| T |
38931890 |
ctgactcttctaccaaacgatcataccctatttgagtgttcagttcatcctttgctt |
38931946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 12151567 - 12151823
Alignment:
| Q |
18 |
aaaacatgaagcatcactccatgtttcaggatctctttgaatggcccatgcattaatcaaaactatcgtgtcacgtggaatagtaaatccttcaatattg |
117 |
Q |
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| T |
12151567 |
aaaacatgcagcattattccaagtttcatcgtctctttgaatggcccatgcattaatcaaaactatagtgtcacgtggaatagtataaccttcgatatta |
12151666 |
T |
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| Q |
118 |
cactcgtttgaagaaaaacgaggcaataataatggagctggagagtacaaccgaagtgtctcgtagataatgttttgaatgtaaggaagatttggaatgt |
217 |
Q |
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| T |
12151667 |
cattcatccgaagaaaaacgaggtaatagtaatggagcaggagagtataatcttagtgtctcgtagataatgttttgaatgtatggaagatttgaaatgt |
12151766 |
T |
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| Q |
218 |
ctgactcttctaccaaacgatcataccctatttgagtgttcagttcatcctttgctt |
274 |
Q |
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||||||| |||||||||||||||| ||||||| |||| | |||||||||||||| |
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| T |
12151767 |
ctgactcatctaccaaacgatcattgcctattttggtgtataattcatcctttgctt |
12151823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 38955844 - 38955786
Alignment:
| Q |
31 |
tcactccatgtttcaggatctctttgaatggcccatgcattaatcaaaactatcgtgtc |
89 |
Q |
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| T |
38955844 |
tcactccatgtttcagggtctctatgaatggcccaagcattgatcaatactatggtgtc |
38955786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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