View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10730_low_6 (Length: 224)
Name: NF10730_low_6
Description: NF10730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10730_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 1900619 - 1900810
Alignment:
| Q |
17 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcc |
116 |
Q |
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| T |
1900619 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttcc |
1900718 |
T |
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| Q |
117 |
tttttcgtaaataatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatggtaaatgg |
208 |
Q |
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| T |
1900719 |
tttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaatgg |
1900810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 1910065 - 1910256
Alignment:
| Q |
17 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcc |
116 |
Q |
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| T |
1910065 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttcc |
1910164 |
T |
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| Q |
117 |
tttttcgtaaataatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatggtaaatgg |
208 |
Q |
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| T |
1910165 |
tttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaatgg |
1910256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 1893770 - 1893908
Alignment:
| Q |
70 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
169 |
Q |
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||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
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| T |
1893770 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1893869 |
T |
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| Q |
170 |
attaggttctgggttcctaacaggatatatggtaaatgg |
208 |
Q |
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| T |
1893870 |
gttaggttctgggtccctgacaggctatattgtaaatgg |
1893908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 1903216 - 1903354
Alignment:
| Q |
70 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
169 |
Q |
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||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
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| T |
1903216 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1903315 |
T |
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| Q |
170 |
attaggttctgggttcctaacaggatatatggtaaatgg |
208 |
Q |
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||||||||||||| ||| ||||| ||||| |||||||| |
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| T |
1903316 |
gttaggttctgggtccctgacaggctatattgtaaatgg |
1903354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 2934605 - 2934472
Alignment:
| Q |
68 |
gaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttat |
167 |
Q |
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||||||||| ||||| || |||||||||||| || |||||||||||||||| ||||||||| ||||||||| |||| ||||||||||| | |
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| T |
2934605 |
gaggagctttcctctgggcagtaggagtaccgttcaacggtaattttcctttttcataaataatacattccattt-------gttgctgtgttattttct |
2934513 |
T |
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| Q |
168 |
ccattaggttctgggttcctaacaggatatatggtaaatgg |
208 |
Q |
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|| ||||||||| ||| ||||||||| || || |||||||| |
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| T |
2934512 |
ccgttaggttctaggtccctaacaggctacattgtaaatgg |
2934472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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