View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10731_high_2 (Length: 336)

Name: NF10731_high_2
Description: NF10731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10731_high_2
NF10731_high_2
[»] chr2 (2 HSPs)
chr2 (11-321)||(10598670-10598980)
chr2 (28-106)||(15183367-15183445)
[»] chr1 (3 HSPs)
chr1 (28-127)||(24531769-24531868)
chr1 (22-121)||(18903330-18903429)
chr1 (53-124)||(14251585-14251656)
[»] chr7 (2 HSPs)
chr7 (212-295)||(6255291-6255374)
chr7 (31-106)||(24019593-24019668)
[»] chr6 (2 HSPs)
chr6 (11-102)||(32540746-32540837)
chr6 (32-73)||(27848220-27848261)
[»] scaffold0011 (1 HSPs)
scaffold0011 (58-106)||(219931-219979)
[»] chr8 (1 HSPs)
chr8 (28-68)||(38093734-38093774)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 10598670 - 10598980
Alignment:
Q  11 caaaggcccgactatatgataccatgtttatgttgtcttgattcaagatgtgaaggatctgatcaggcaaggtaatgtaactgtttgccacactctcata 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  10598670 caaaggctcgactatatgataccatgtttatgttgtcttgattcaagatgtgaaggatctaatcaggcaaggtaatgtaactgtttgccacactctcaga 10598769  T
Q  111 aagggtaatcagtgcgcgaattttatttttgttcatggttatcgaaaatacatatctctacagcttcctnnnnnnnngtctgannnnnnnatactttaat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||||||       ||||||||||    
T  10598770 aagggtaatcagtgcgcgaattttatttttgttcatggttatcgaaaatatatatctctacagcttcctaaaaaaaagtctgatttttttatactttaat 10598869  T
Q  211 tgtaagctttccaatacactgatattaagttatgtattttgatcataagtttacatcagcacaattttatatagggtataatataacaggtcaatttcag 310  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  10598870 tgtaagctttccaataccctgatattaagttatgtattttgatcataagtttacatcaacacaattttatatagggtataatataacatgtcaatttcag 10598969  T
Q  311 atagtgtattt 321  Q
    |||||||||||    
T  10598970 atagtgtattt 10598980  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 15183367 - 15183445
Alignment:
Q  28 gataccatgtttatgttgtcttgattcaagatgtgaaggatctgatcaggcaaggtaatgtaactgtttgccacactct 106  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  15183367 gatatcatgtttatgttgtcttgatctaagatgtgaaggatctgattaggtaaggtaatgtaacagtttgccacactct 15183445  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 24531868 - 24531769
Alignment:
Q  28 gataccatgtttatgttgtcttgattcaagatgtgaaggatctgatcaggcaaggtaatgtaactgtttgccacactctcataaagggtaatcagtgcgc 127  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||| |||| |||||    
T  24531868 gataccatgtttatgatgtcttgatccaagatgtgaaggatctgattaggcaaggtaatgtaactgtttgtcacactcttaaaaagggtgatcaatgcgc 24531769  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 18903330 - 18903429
Alignment:
Q  22 ctatatgataccatgtttatgttgtcttgattcaagatgtgaaggatctgatcaggcaaggtaatgtaactgtttgccacactctcataaagggtaatca 121  Q
    |||| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||| ||||||||| | ||||||||||||    
T  18903330 ctatgtgataccatgtgtatgttgtcttgatccaggatgtgaaggatctgattaggcaaggtaatgtaactttttaccacactcttagaaagggtaatca 18903429  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 14251585 - 14251656
Alignment:
Q  53 tcaagatgtgaaggatctgatcaggcaaggtaatgtaactgtttgccacactctcataaagggtaatcagtg 124  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| | | || ||||||||||    
T  14251585 tcaagatatgaaggatctgattaggcaaggtaatgtaacagtttgccacactcttagatagagtaatcagtg 14251656  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 6255374 - 6255291
Alignment:
Q  212 gtaagctttccaatacactgatattaagttatgtattttgatcataagtttacatcagcacaattttatatagggtataatata 295  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6255374 gtaagctttccaatatcatgatattaagttatgtattttgatcataagtttacatcaacacaaatttatatagggtataatata 6255291  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 24019668 - 24019593
Alignment:
Q  31 accatgtttatgttgtcttgattcaagatgtgaaggatctgatcaggcaaggtaatgtaactgtttgccacactct 106  Q
    ||||||||||||||||||||||||||||||| |||||| | ||  |||||  |||||| | ||||||||| |||||    
T  24019668 accatgtttatgttgtcttgattcaagatgttaaggatttaattgggcaacataatgtcattgtttgccatactct 24019593  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 32540746 - 32540837
Alignment:
Q  11 caaaggcccgactatatgataccatgtttatgttgtcttgattcaagatgtgaaggatctgatcaggcaaggtaatgtaactgtttgccaca 102  Q
    |||||||||||||||  ||||||||||||||||||| || || |||||||| |||||| |||||||||||| |||||||  |||||||||||    
T  32540746 caaaggcccgactatgagataccatgtttatgttgtttttatccaagatgttaaggatttgatcaggcaagataatgtagttgtttgccaca 32540837  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 27848261 - 27848220
Alignment:
Q  32 ccatgtttatgttgtcttgattcaagatgtgaaggatctgat 73  Q
    |||||||||||  |||||||||||||||||||||||| ||||    
T  27848261 ccatgtttatgcggtcttgattcaagatgtgaaggatttgat 27848220  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 219931 - 219979
Alignment:
Q  58 atgtgaaggatctgatcaggcaaggtaatgtaactgtttgccacactct 106  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  219931 atgtgaaggatttgattaggcaaggtaatgtaactgtttaccacactct 219979  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 38093774 - 38093734
Alignment:
Q  28 gataccatgtttatgttgtcttgattcaagatgtgaaggat 68  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  38093774 gataccatgtttatgttgtcttgattcaagatgttaaggat 38093734  T

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