View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10731_high_5 (Length: 256)
Name: NF10731_high_5
Description: NF10731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10731_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 52547404 - 52547513
Alignment:
| Q |
9 |
acaagtctctggtcccctcgtttagacccttgagtgtgactgggcctaacaccccggcattccatgtctcaaagtgaacgccaacattctactattaatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52547404 |
acaagtctctggtcccctcgtttagacccttgagtgtgactgggcctaacaccccggcattccatgtctcaaagtgaacgccaacattctacgattaatt |
52547503 |
T |
|
| Q |
109 |
gaaaagattt |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
52547504 |
gaaaagattt |
52547513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 52547574 - 52547644
Alignment:
| Q |
180 |
ttaagagaactaaccgggagaccgacagcaacactaagcaaagagatcttgttatttccaaccctttgctt |
250 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52547574 |
ttaagagaactaaccaggagaccgacagcaacactaagcaaagagatcttgttatttccaacccttagctt |
52547644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 5232512 - 5232413
Alignment:
| Q |
9 |
acaagtctctggtcccctcgtttagacccttgagtgtgactgggcctaacaccccggcattccatgtctcaaagtgaacgccaacattctactattaatt |
108 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| | | | ||||||||||||||||| |||||||||| |||||||| | ||||||||||| |||||||| |
|
|
| T |
5232512 |
acaagtctcttgtcccctcatctagacccttcaatcttactgggcctaacaccccaacattccatgtttcaaagtgcaggccaacattctggtattaatt |
5232413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 5232307 - 5232260
Alignment:
| Q |
188 |
actaaccgggagaccgacagcaacactaagcaaagagatcttgttatt |
235 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
5232307 |
actaaccggaagacccacagcaacactaagtaaagaaatcttgttatt |
5232260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 17128433 - 17128355
Alignment:
| Q |
20 |
gtcccctcgtttagacccttgagtgtgactgggcctaacaccccggcattccatgtctcaaagtgaacgccaacattct |
98 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||| || |||||||| | ||| |||| ||||||||||||| |
|
|
| T |
17128433 |
gtcccctcgtttagacccttcaaagttactgggcctaacacaccaacattccatttttcatagtgcacgccaacattct |
17128355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 17128263 - 17128206
Alignment:
| Q |
187 |
aactaaccgggagaccgacagcaacactaagcaaagagatcttgttatttccaaccct |
244 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
17128263 |
aactaaccgaaagaccgacggcaacactaagtagagaaatcttgttattgccaaccct |
17128206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University