View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10731_low_1 (Length: 356)
Name: NF10731_low_1
Description: NF10731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10731_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 3238818 - 3239155
Alignment:
| Q |
1 |
cagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcagaaagtttcttcctcaaaggctattcatgctc |
100 |
Q |
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| T |
3238818 |
cagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcagaaagtttcttcctcaaaggctattcatgctc |
3238917 |
T |
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| Q |
101 |
tgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtatgttttcgatannnnnnncaggcggattgttatgaatcca |
200 |
Q |
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| T |
3238918 |
tgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtatgttttcgatatttttttcaggcggattgttatgaatcca |
3239017 |
T |
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| Q |
201 |
aaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaattttaattttcctaaagggtggagaagatatgtatgtaaat |
300 |
Q |
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| T |
3239018 |
aaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaattttaattttcctaaagggtggagaagatatgtatgtaaat |
3239117 |
T |
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| Q |
301 |
cttgagttggctcttacaaatcaattcagtgccttgct |
338 |
Q |
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| T |
3239118 |
cttgagttggctcttacaaatcaattcagtgccttgct |
3239155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 3242956 - 3243022
Alignment:
| Q |
4 |
ggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
70 |
Q |
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| T |
3242956 |
ggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 338
Target Start/End: Original strand, 3243141 - 3243299
Alignment:
| Q |
179 |
caggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatttta---attttcctaaa |
275 |
Q |
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||||||||||||||||||||||||||||| | |||||||| | |||||||||||||| |||||| || | ||||| || ||| ||||| ||||| |
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| T |
3243141 |
caggcggattgttatgaatccaaaagggaacgagaacaactctggttacttgtcattatcaattctttcggttgttgctgatattactgatttttctaaa |
3243240 |
T |
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| Q |
276 |
gggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgct |
338 |
Q |
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| T |
3243241 |
gactggaaaagatatg----taaatcttgagttggctcttactaatcaagccaatgccttgct |
3243299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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