View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10731_low_10 (Length: 252)
Name: NF10731_low_10
Description: NF10731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10731_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 15744055 - 15744276
Alignment:
| Q |
19 |
cttccaacttagacatatcaaatcaaatcgaacaccttaaacactctcttttatccacccttgaattttttccaccctttactggtcgtctcaaaatcga |
118 |
Q |
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| T |
15744055 |
cttccaacttagacacatcaaatcaaatcgaacaccttaaacactctctttcatccacccttgaattttttccaccctttactggtcgtctcaaaatcaa |
15744154 |
T |
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| Q |
119 |
ggaacacgaagataacactatctcgtgttccatcacgtgcaacaatgctggtgcactatttgttcatgctgcagcagaaaataccagtgtcgatgacatc |
218 |
Q |
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| T |
15744155 |
ggaacacgaagataacactatctcgtgttccatcacgtgcaacaatgttggtgcactatttgttcatgctgcagcagaaaataccagtgtcgatgacatc |
15744254 |
T |
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| Q |
219 |
attggagtcacgtatcatccta |
240 |
Q |
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| T |
15744255 |
attggagccacgtatcatccta |
15744276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 15190325 - 15190436
Alignment:
| Q |
76 |
cccttgaattttttccaccctttactggtcgtctcaaaatcgaggaacacgaagataacactatctcgtgttccatcacgtgcaacaatgctggtgcact |
175 |
Q |
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| T |
15190325 |
cccttgcattctttccaccctttactggtcgtctcgaaattacagaacacgaagataacactatttcgtgttcccttgcatgcaaaaatgctggtgcact |
15190424 |
T |
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| Q |
176 |
atttgttcatgc |
187 |
Q |
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| T |
15190425 |
ctttgttcatgc |
15190436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 37606052 - 37605973
Alignment:
| Q |
84 |
ttttttccaccctttactggtcgtctcaaaatcgaggaacacgaagataacactatctcgtgttccatcacgtgcaacaatg |
165 |
Q |
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| T |
37606052 |
ttttttccacctttcacaggtcgtctcaagatcatggaacac--agataacactatctcatgttcaatctcatgcaacaatg |
37605973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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