View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10731_low_12 (Length: 234)
Name: NF10731_low_12
Description: NF10731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10731_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 27646304 - 27646102
Alignment:
| Q |
23 |
agatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattgttcgacttttatttcatctgtataccacaaaaacttttaataac |
122 |
Q |
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| T |
27646304 |
agatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgacttttatttcatctgtataccacaaaaacttttaataac |
27646205 |
T |
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| Q |
123 |
agtca---nnnnnnnnctataaaccagtatcatctgcacgcaactgcagggactacttccattgagctgtatgttctcctcagtcccaacatattccttt |
219 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
27646204 |
agtcattttttttcttctataaaccagtatcatctgcacgcaactgcagagactactttcattgagctgtatgttcccctcagtcccaacgtattccttt |
27646105 |
T |
|
| Q |
220 |
gct |
222 |
Q |
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||| |
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| T |
27646104 |
gct |
27646102 |
T |
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