View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10731_low_14 (Length: 213)
Name: NF10731_low_14
Description: NF10731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10731_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 47254090 - 47254274
Alignment:
| Q |
15 |
ttgtcaattcaacagcaaactaacactaaaattacaaaaacataacacaatttttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattg |
114 |
Q |
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| T |
47254090 |
ttgtcaattcaacagcaaactaacactaaaattacaaaaacataacacaatttttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattg |
47254189 |
T |
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| Q |
115 |
aagcttagatctgttgacagactcattagacaggaatctgtcaatgtatgaaactgcaagatgaagggtttgagggagaagcttg |
199 |
Q |
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| T |
47254190 |
aagcttagatctgttgacagactcattggacaggaatctgtcaatgtatgaaacagcaagatgaagggtttgagggagaagcttg |
47254274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 47249722 - 47249827
Alignment:
| Q |
75 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattagacaggaatctgtcaatgtatgaaactgcaag |
174 |
Q |
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| T |
47249722 |
cttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaactgacag |
47249821 |
T |
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| Q |
175 |
atgaag |
180 |
Q |
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| T |
47249822 |
atgaag |
47249827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 47242886 - 47243003
Alignment:
| Q |
68 |
ttgagatcttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattagacaggaatctgtcaatgtatgaaa |
167 |
Q |
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| T |
47242886 |
ttgagatcttacgatgcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtatgaaa |
47242985 |
T |
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| Q |
168 |
ctgcaagatgaagggttt |
185 |
Q |
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| T |
47242986 |
cagagagatgaagggttt |
47243003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 47266025 - 47265980
Alignment:
| Q |
75 |
cttacgatgcgatgagcatggatgaaacaccaagcaattgaagctt |
120 |
Q |
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| T |
47266025 |
cttacgatgcaatgtacatggatgaaacacccagcaattgaagctt |
47265980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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