View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10731_low_3 (Length: 330)
Name: NF10731_low_3
Description: NF10731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10731_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 75 - 319
Target Start/End: Complemental strand, 41342995 - 41342756
Alignment:
| Q |
75 |
tactaactagcagttgataatatgacgtgcatgcctagattgaagtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcatt |
174 |
Q |
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| T |
41342995 |
tactaacttgcagttgataat--gacgtgcatgcctagattgatgtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcatt |
41342898 |
T |
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| Q |
175 |
attattattactaggtaaagtatccttctgcattgagctcgtttgatagattgatgaaagctgccattgggaaaaggatcgtcgtatttttagattatga |
274 |
Q |
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| T |
41342897 |
attatta---ctaggtaaagcacccttctgcattgagctcgtttgatagattgatgaaagctgccattgggaaaaggatcgtcgtatttttagattatga |
41342801 |
T |
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| Q |
275 |
tggtaccttatcacccattgtaaatgaccctgatcgtgctttcat |
319 |
Q |
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| T |
41342800 |
tggtaccttatcacccattgtaaatgaccctgatcgtgctttcat |
41342756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 41343098 - 41343037
Alignment:
| Q |
16 |
gaaattatacgtgtatatcgacatattattttaaagttatatataaatgtacattacattac |
77 |
Q |
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| T |
41343098 |
gaaattatacgtgtatatcgacatattattttaaagttatatataaatgtacattacattac |
41343037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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