View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10732_high_1 (Length: 476)
Name: NF10732_high_1
Description: NF10732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10732_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 12422372 - 12422114
Alignment:
| Q |
1 |
atttcttctttctcaacatgctagcactgtgttgttgattgcacagaaatcgcaaatgtaaaagagacataaagaaataacttctgaact-----gtaag |
95 |
Q |
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| T |
12422372 |
atttcttctttctcaacatgctagcagtgtgttgttgattgcacataaatcgcaaatgtaaaagagacatgaagaaataacttctgaacttagctgaaag |
12422273 |
T |
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| Q |
96 |
tggttattgttacttttcttacaagtaaactaaaagcttaataaaatctgaaaattttaatatgaggatctaccactcccttctttgcatttatgattgt |
195 |
Q |
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| T |
12422272 |
tggttattgttacttttcttacaagtaaactaaaagcttaataaaatctaaaaaatttaatatgaggatctaccactcccttctttgcatttatgattgt |
12422173 |
T |
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| Q |
196 |
tttgaactatttaatattttcttattcaaaatgtttaaccctaggaatactgctcatgc |
254 |
Q |
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| T |
12422172 |
tttgaactatttaatattttcttttgcaaaatgtttaaccctagcaatacagctcatgc |
12422114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 12422096 - 12422054
Alignment:
| Q |
270 |
taaataccaccttatttacctttgccaaccattttcttcccac |
312 |
Q |
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| T |
12422096 |
taaataccaccttatttacctttgccaaccattttcatcccac |
12422054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 12421947 - 12421896
Alignment:
| Q |
418 |
aatcaagtaaatcacacttgagagagatctttgtctcttctttgttcatctc |
469 |
Q |
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| T |
12421947 |
aatctagtaaatcacagttgagagagatctttgtgtcttctttgttcttctc |
12421896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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