View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10732_high_3 (Length: 250)

Name: NF10732_high_3
Description: NF10732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10732_high_3
NF10732_high_3
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-249)||(90489-90722)
[»] scaffold0036 (1 HSPs)
scaffold0036 (71-206)||(28646-28781)
[»] chr1 (4 HSPs)
chr1 (162-228)||(10683551-10683617)
chr1 (155-216)||(9331969-9332030)
chr1 (139-206)||(16572714-16572781)
chr1 (135-179)||(18350404-18350448)
[»] chr3 (2 HSPs)
chr3 (155-216)||(29858294-29858356)
chr3 (145-216)||(18680416-18680488)
[»] chr2 (3 HSPs)
chr2 (118-229)||(18682273-18682385)
chr2 (118-192)||(22114812-22114886)
chr2 (95-151)||(19005866-19005922)
[»] chr4 (2 HSPs)
chr4 (145-210)||(24761924-24761989)
chr4 (145-216)||(5750378-5750450)
[»] chr6 (1 HSPs)
chr6 (139-206)||(32854952-32855019)


Alignment Details
Target: scaffold0004 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 90489 - 90722
Alignment:
Q  16 ggatcatacatagataagtcattggtcttatttctatttatagtctaattagatccaattagggcttatttgtgcgtatgggtctaaaatcattacgttc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  90489 ggatcatacatagataagtcattggtcttatttctatttatagtctaattagatacaattagggcttatttgtgcgtatgggtctaaaattattacgttc 90588  T
Q  116 ggaacaattgaaatctttttaagacttgaatcataactcaataaagaaattgcattaataaatttcaacaaataaacataggttcatcttaaaactttaa 215  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  90589 ggaacaattgaaatttttttaagacttaaatcataactcaataaagaaattgcattaataaattccaacaaataaacataggttcatcttagaactttaa 90688  T
Q  216 taagagagtgtttaccataggttcttgacatttt 249  Q
    ||||||||||||||  ||||||||||| ||||||    
T  90689 taagagagtgtttattataggttcttgtcatttt 90722  T

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Target: scaffold0036 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 28646 - 28781
Alignment:
Q  71 caattagggcttatttgtgcgtatgggtctaaaatcattacgttcggaacaattgaaatctttttaagacttgaatcataactcaataaagaaattgcat 170  Q
    ||||||| |||||||||||| |  |||||||||| |||||| ||  ||||||||||||  | | ||||| || |||||||| | ||||||||||||||||    
T  28646 caattagagcttatttgtgccttggggtctaaaagcattacatttagaacaattgaaaattatataagatttaaatcataaatgaataaagaaattgcat 28745  T
Q  171 taataaatttcaacaaataaacataggttcatctta 206  Q
    ||||| |||| | |||||||| | ||||||||||||    
T  28746 taatagattttaccaaataaataaaggttcatctta 28781  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 10683617 - 10683551
Alignment:
Q  162 aaattgcattaataaatttcaacaaataaacataggttcatcttaaaactttaataagagagtgttt 228  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||| |||| ||||||    
T  10683617 aaattgcattaataaattccaacaaataaacaaaggttcatcttagaaccttaatcagagggtgttt 10683551  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 9332030 - 9331969
Alignment:
Q  155 aataaagaaattgcattaataaatttcaacaaataaacataggttcatcttaaaactttaat 216  Q
    ||||||||||||||||||| |||||  |||||||||||| |||||||||||| |||| ||||    
T  9332030 aataaagaaattgcattaaaaaattgtaacaaataaacagaggttcatcttagaactctaat 9331969  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 16572714 - 16572781
Alignment:
Q  139 acttgaatcataactcaataaagaaattgcattaataaatttcaacaaataaacataggttcatctta 206  Q
    |||| |||||||||| |||||||||||| ||||||| ||||  |||||||||||| || |||||||||    
T  16572714 acttaaatcataactgaataaagaaattacattaatgaattcgaacaaataaacaaagtttcatctta 16572781  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 18350448 - 18350404
Alignment:
Q  135 taagacttgaatcataactcaataaagaaattgcattaataaatt 179  Q
    |||||||| ||| |||| | |||||||||||||||||||||||||    
T  18350448 taagacttaaataataagtgaataaagaaattgcattaataaatt 18350404  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 29858294 - 29858356
Alignment:
Q  155 aataaagaaattgcattaataaatttcaacaaataaacat-aggttcatcttaaaactttaat 216  Q
    ||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||| ||||    
T  29858294 aataatgaaattgcattaataaatttcaacaaataaacataaatttcatcttaaaactctaat 29858356  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 18680416 - 18680488
Alignment:
Q  145 atcataactcaataaagaaattgcattaataaa-tttcaacaaataaacataggttcatcttaaaactttaat 216  Q
    ||||||||| |||||| |||||||||||||||| ||| |||||||||| | |||| ||||||| |||| ||||    
T  18680416 atcataactaaataaataaattgcattaataaatttttaacaaataaatagaggtacatcttagaactctaat 18680488  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 18682273 - 18682385
Alignment:
Q  118 aacaattgaaatctttttaagacttgaatcataactcaataaa-gaaattgcattaataaatttcaacaaataaacataggttcatcttaaaactttaat 216  Q
    |||||||||||  | | |||||||| |||||||| | || ||| | |||||||||||||| ||| |||||||||||| |||||||||||| |||  ||||    
T  18682273 aacaattgaaaaatatataagacttaaatcataattgaacaaatgtaattgcattaataacttttaacaaataaacaaaggttcatcttagaaccctaat 18682372  T
Q  217 aagagagtgttta 229  Q
     |||| |||||||    
T  18682373 tagagggtgttta 18682385  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 22114812 - 22114886
Alignment:
Q  118 aacaattgaaatctttttaagacttgaatcataactcaataaagaaattgcattaataaatttcaacaaataaac 192  Q
    |||||||||||  | | ||||| || |||||||| | |||||||||||| ||||||||||||  |||||||||||    
T  22114812 aacaattgaaaattatataagagttaaatcataattaaataaagaaatttcattaataaattcaaacaaataaac 22114886  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 19005866 - 19005922
Alignment:
Q  95 gggtctaaaatcattacgttcggaacaattgaaatctttttaagacttgaatcataa 151  Q
    |||||||||| |||||| |||| || |||||||| || | |||||||||||||||||    
T  19005866 gggtctaaaagcattacattcgaaataattgaaaactatgtaagacttgaatcataa 19005922  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 24761989 - 24761924
Alignment:
Q  145 atcataactcaataaagaaattgcattaataaatttcaacaaataaacataggttcatcttaaaac 210  Q
    ||||||| | |||||||||| ||||||||||||||  ||||||||||   ||||||||||||||||    
T  24761989 atcataattgaataaagaaactgcattaataaattctaacaaataaatggaggttcatcttaaaac 24761924  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 5750378 - 5750450
Alignment:
Q  145 atcataactcaataaagaaattgcattaataaa-tttcaacaaataaacataggttcatcttaaaactttaat 216  Q
    ||||||||| |||||| |||||||||||||||| ||| |||||||||| | |||| ||||||| |||| ||||    
T  5750378 atcataactaaataaataaattgcattaataaatttttaacaaataaatagaggtacatcttagaactctaat 5750450  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 32855019 - 32854952
Alignment:
Q  139 acttgaatcataactcaataaagaaattgcattaataaatttcaacaaataaacataggttcatctta 206  Q
    |||| |||||||||| |||||| || ||||||||||||| | ||| ||||||| | ||||||||||||    
T  32855019 acttaaatcataactgaataaacaacttgcattaataaaatccaataaataaataaaggttcatctta 32854952  T

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