View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10732_low_10 (Length: 222)

Name: NF10732_low_10
Description: NF10732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10732_low_10
NF10732_low_10
[»] chr6 (7 HSPs)
chr6 (26-156)||(13539831-13539966)
chr6 (154-192)||(8409194-8409232)
chr6 (157-192)||(1346918-1346953)
chr6 (157-192)||(1354901-1354936)
chr6 (151-192)||(1941803-1941844)
chr6 (159-192)||(3815223-3815256)
chr6 (155-192)||(9161075-9161112)
[»] chr7 (16 HSPs)
chr7 (157-192)||(22699116-22699151)
chr7 (158-192)||(5180303-5180337)
chr7 (154-192)||(48735267-48735305)
chr7 (155-192)||(42495981-42496018)
chr7 (156-192)||(2541166-2541202)
chr7 (156-192)||(32758214-32758250)
chr7 (157-192)||(21172153-21172188)
chr7 (153-192)||(34626353-34626392)
chr7 (157-192)||(42798623-42798658)
chr7 (157-192)||(43557426-43557461)
chr7 (157-192)||(46354148-46354183)
chr7 (157-192)||(47077999-47078034)
chr7 (158-192)||(18326989-18327023)
chr7 (155-192)||(35334960-35334997)
chr7 (155-192)||(42805476-42805513)
chr7 (157-193)||(2663076-2663112)
[»] chr4 (15 HSPs)
chr4 (157-192)||(20405047-20405082)
chr4 (157-192)||(55766612-55766647)
chr4 (157-192)||(55830867-55830902)
chr4 (155-192)||(48598969-48599006)
chr4 (156-192)||(5648212-5648248)
chr4 (156-192)||(6430771-6430807)
chr4 (156-192)||(20224937-20224973)
chr4 (156-192)||(30639333-30639369)
chr4 (157-192)||(10660358-10660393)
chr4 (157-192)||(10874503-10874538)
chr4 (157-192)||(23501747-23501782)
chr4 (155-188)||(5306813-5306846)
chr4 (156-192)||(14590790-14590826)
chr4 (160-192)||(16911519-16911551)
chr4 (160-192)||(18969698-18969730)
[»] chr3 (15 HSPs)
chr3 (157-192)||(6411967-6412002)
chr3 (153-192)||(8247835-8247874)
chr3 (156-192)||(7697031-7697067)
chr3 (156-192)||(16735416-16735452)
chr3 (160-192)||(21874999-21875031)
chr3 (156-192)||(40272958-40272994)
chr3 (154-189)||(1217063-1217098)
chr3 (153-192)||(9276246-9276285)
chr3 (157-192)||(10870097-10870132)
chr3 (157-192)||(12914181-12914216)
chr3 (157-192)||(13730750-13730785)
chr3 (157-192)||(46421183-46421218)
chr3 (157-192)||(52926356-52926391)
chr3 (156-189)||(12525385-12525418)
chr3 (156-192)||(9607178-9607214)
[»] scaffold0057 (1 HSPs)
scaffold0057 (154-192)||(24913-24951)
[»] chr8 (13 HSPs)
chr8 (154-192)||(39461142-39461180)
chr8 (155-192)||(23286439-23286476)
chr8 (156-192)||(30454241-30454277)
chr8 (157-192)||(7136675-7136710)
chr8 (157-192)||(12670394-12670429)
chr8 (157-192)||(35261633-35261668)
chr8 (154-192)||(2626470-2626508)
chr8 (156-192)||(13160655-13160691)
chr8 (156-192)||(17823529-17823565)
chr8 (152-192)||(25250471-25250511)
chr8 (156-192)||(28817772-28817808)
chr8 (156-192)||(36720749-36720785)
chr8 (156-192)||(40605051-40605087)
[»] chr5 (12 HSPs)
chr5 (155-192)||(41014271-41014308)
chr5 (156-192)||(38879534-38879570)
chr5 (157-192)||(1565385-1565420)
chr5 (157-192)||(19438703-19438738)
chr5 (157-192)||(24448844-24448879)
chr5 (157-192)||(35710267-35710302)
chr5 (156-190)||(22600407-22600441)
chr5 (154-192)||(41956883-41956921)
chr5 (160-192)||(4619252-4619284)
chr5 (160-192)||(27328709-27328741)
chr5 (156-192)||(37024700-37024736)
chr5 (160-192)||(43334159-43334191)
[»] chr2 (11 HSPs)
chr2 (159-192)||(17896215-17896248)
chr2 (152-192)||(8455462-8455502)
chr2 (148-192)||(12024064-12024107)
chr2 (156-192)||(14530271-14530307)
chr2 (156-192)||(25079864-25079900)
chr2 (156-192)||(39189567-39189603)
chr2 (154-192)||(23397717-23397755)
chr2 (158-192)||(24200771-24200805)
chr2 (159-192)||(11514392-11514425)
chr2 (155-192)||(22371009-22371046)
chr2 (156-192)||(21779405-21779441)
[»] scaffold0187 (2 HSPs)
scaffold0187 (160-192)||(10194-10226)
scaffold0187 (160-192)||(20522-20554)
[»] chr1 (11 HSPs)
chr1 (156-192)||(34714599-34714635)
chr1 (156-192)||(34725242-34725278)
chr1 (156-192)||(41319952-41319988)
chr1 (157-192)||(10668197-10668232)
chr1 (157-192)||(18944620-18944655)
chr1 (157-192)||(22930213-22930248)
chr1 (157-192)||(32632702-32632737)
chr1 (154-192)||(14617012-14617050)
chr1 (155-192)||(19932898-19932935)
chr1 (159-192)||(40424721-40424754)
chr1 (160-192)||(23768466-23768498)
[»] scaffold0168 (1 HSPs)
scaffold0168 (157-192)||(30533-30568)
[»] scaffold0024 (1 HSPs)
scaffold0024 (155-192)||(83827-83864)
[»] scaffold0005 (1 HSPs)
scaffold0005 (156-192)||(226552-226588)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 13539831 - 13539966
Alignment:
Q  26 cagtgtacttcatatcaaaatatagctcacaagaaggaatctt---cttannnnnnnncttctgtgcagctaaatcaacctata--tagtacacagtttc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||         ||||||||||||||| |||||||||  ||||||||||||||    
T  13539831 cagtgtacttcatatcaaaatatagctcacaagaaggaatcttgttcttattcttctttttctgtgcagctaaaacaacctatatatagtacacagtttc 13539930  T
Q  121 atcaattttccaagcatcatttcaacgcaaatttat 156  Q
    ||||||||||||||||||||||||||||||||||||    
T  13539931 atcaattttccaagcatcatttcaacgcaaatttat 13539966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 8409194 - 8409232
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  8409194 tatgaggggtaaccttggcgcaactggtaaagttgttgt 8409232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 1346918 - 1346953
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  1346918 gaggggtaaccttggcgcaactggtaaagttgttgt 1346953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 1354936 - 1354901
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  1354936 gaggggtaaccttggcgcaactggtaaagttgttgt 1354901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 1941803 - 1941844
Alignment:
Q  151 atttatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||| ||||||||||||||  ||||||||||||||||||||    
T  1941803 atttacgaggggtaaccttggtgcaactggtaaagttgttgt 1941844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 3815256 - 3815223
Alignment:
Q  159 ggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||| |||||||||||||||||||||    
T  3815256 ggggtaaccttggcgcaactggtaaagttgttgt 3815223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 9161075 - 9161112
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  9161075 atgaggggtaaccttgacgcaatcggtaaagttgttgt 9161112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 22699151 - 22699116
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||||||||||||||||||||||    
T  22699151 gaggggtaaccttgacgcaactggtaaagttgttgt 22699116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 5180337 - 5180303
Alignment:
Q  158 aggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||||||||||||||||||||||    
T  5180337 aggggtaaccttgacgcaactggtaaagttgttgt 5180303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 48735305 - 48735267
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  48735305 tatgaggggtaaccttggcgcaactggtaaagttgttgt 48735267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 42496018 - 42495981
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||| |||||||||||||||||||||    
T  42496018 atgaggggtaaccttggcgcaactggtaaagttgttgt 42495981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 2541202 - 2541166
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2541202 tgaggggtaaccttggcgcaactggtaaagttgttgt 2541166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 32758214 - 32758250
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  32758214 tgaggggtaaccttggcgcaactggtaaagttgttgt 32758250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 21172188 - 21172153
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  21172188 gaggggtaaccttggcgcaactggtaaagttgttgt 21172153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 34626392 - 34626353
Alignment:
Q  153 ttatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  34626392 ttatgaggggtaaccttagcgcaactggtaaagttgttgt 34626353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 42798623 - 42798658
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  42798623 gaggggtaaccttggcgcaactggtaaagttgttgt 42798658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 43557426 - 43557461
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  43557426 gaggggtaaccttgccgcaactggtaaagttgttgt 43557461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 46354148 - 46354183
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  46354148 gaggggtaaccttggcgcaactggtaaagttgttgt 46354183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 47078034 - 47077999
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  47078034 gaggggtaaccttggcgcaactggtaaagttgttgt 47077999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 18326989 - 18327023
Alignment:
Q  158 aggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||| |||||||||||||||||||||    
T  18326989 aggggtaaccttggcgcaactggtaaagttgttgt 18327023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 35334997 - 35334960
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  35334997 atgagggataaccttggcgcaactggtaaagttgttgt 35334960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 42805476 - 42805513
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||| || ||||||||||||||||||    
T  42805476 atgaggggtaaccttggcgtaactggtaaagttgttgt 42805513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 2663112 - 2663076
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgtt 193  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  2663112 gaggggtaaccttggcgcaactagtaaagttgttgtt 2663076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 20405047 - 20405082
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||||||||||||||||||||||    
T  20405047 gaggggtaaccttgacgcaactggtaaagttgttgt 20405082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 55766647 - 55766612
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||||||||||||||||||||||    
T  55766647 gaggggtaaccttgacgcaactggtaaagttgttgt 55766612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 55830902 - 55830867
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||||||||||||||||||||||    
T  55830902 gaggggtaaccttgacgcaactggtaaagttgttgt 55830867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 48599006 - 48598969
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||| |||||||||||||||||||||    
T  48599006 atgaggggtaaccttggcgcaactggtaaagttgttgt 48598969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 5648212 - 5648248
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5648212 tgaggggtaaccttggcgcaactggtaaagttgttgt 5648248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 6430807 - 6430771
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  6430807 tgaggggtaaccttggcgcaactggtaaagttgttgt 6430771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 20224937 - 20224973
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  20224937 tgaggggtaaccttggcgcaactggtaaagttgttgt 20224973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 30639333 - 30639369
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30639333 tgaggggtaaccttggcgcaactggtaaagttgttgt 30639369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 10660358 - 10660393
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  10660358 gaggggtaaccttggcgcaactggtaaagttgttgt 10660393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 10874503 - 10874538
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  10874503 gaggggtaaccttggcgcaactggtaaagttgttgt 10874538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 23501747 - 23501782
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  23501747 gaggggtaaccttggcgcaactggtaaagttgttgt 23501782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 5306846 - 5306813
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttg 188  Q
    |||||||||||||||| |||||||||||||||||    
T  5306846 atgaggggtaaccttggcgcaactggtaaagttg 5306813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 14590790 - 14590826
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||| |||||||||| |||||||||||||||||||||    
T  14590790 tgagtggtaaccttggcgcaactggtaaagttgttgt 14590826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 16911519 - 16911551
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||| |||||||||||||||||||||    
T  16911519 gggtaaccttggcgcaactggtaaagttgttgt 16911551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 18969698 - 18969730
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||| |||||||||||||||||||||    
T  18969698 gggtaaccttggcgcaactggtaaagttgttgt 18969730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 6412002 - 6411967
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||||||||||||||||||||||    
T  6412002 gaggggtaaccttgacgcaactggtaaagttgttgt 6411967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 8247874 - 8247835
Alignment:
Q  153 ttatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  8247874 ttatgaggggtaaccttggcgcaactggtaaagttgttgt 8247835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 7697067 - 7697031
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7697067 tgaggggtaaccttggcgcaactggtaaagttgttgt 7697031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 16735416 - 16735452
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16735416 tgaggggtaaccttggcgcaactggtaaagttgttgt 16735452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 21874999 - 21875031
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||||||||||||||||||||    
T  21874999 gggtaaccttgacgcaactggtaaagttgttgt 21875031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 40272994 - 40272958
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  40272994 tgaggggtaaccttggcgcaactggtaaagttgttgt 40272958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 1217063 - 1217098
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgt 189  Q
    ||||||||||||||||| ||||||||||||||||||    
T  1217063 tatgaggggtaaccttggcgcaactggtaaagttgt 1217098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 9276246 - 9276285
Alignment:
Q  153 ttatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  9276246 ttatgaggggtaaccttggcgcaactagtaaagttgttgt 9276285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 10870132 - 10870097
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  10870132 gaggggtaaccttggcgcaactggtaaagttgttgt 10870097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 12914216 - 12914181
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  12914216 gaggggtaaccttggcgcaactggtaaagttgttgt 12914181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 13730785 - 13730750
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  13730785 gaggggtaaccttggcgcaactggtaaagttgttgt 13730750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 46421218 - 46421183
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  46421218 gaggggtaaccttggcgcaactggtaaagttgttgt 46421183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 52926391 - 52926356
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  52926391 gaggggtaaccttggcgcaactggtaaagttgttgt 52926356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 12525385 - 12525418
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgt 189  Q
    ||||||||||||||| ||||||||||||||||||    
T  12525385 tgaggggtaaccttggcgcaactggtaaagttgt 12525418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 9607178 - 9607214
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  9607178 tgaggggtaaccttggcgcaacttgtaaagttgttgt 9607214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 24951 - 24913
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  24951 tatgaggggtaaccttggcgcaactggtaaagttgttgt 24913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 39461180 - 39461142
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  39461180 tatgaggggtaaccttggcgcaactggtaaagttgttgt 39461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 23286476 - 23286439
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||| |||||||||||||||||||||    
T  23286476 atgaggggtaaccttgtcgcaactggtaaagttgttgt 23286439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 30454277 - 30454241
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30454277 tgaggggtaaccttggcgcaactggtaaagttgttgt 30454241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 7136710 - 7136675
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  7136710 gaggggtaaccttggcgcaactggtaaagttgttgt 7136675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 12670429 - 12670394
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  12670429 gaggggtaaccttggcgcaactggtaaagttgttgt 12670394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 35261633 - 35261668
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  35261633 gaggggtaaccttggcgcaactggtaaagttgttgt 35261668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 2626470 - 2626508
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  2626470 tatgaggggtaaccttggcgcaattggtaaagttgttgt 2626508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 13160655 - 13160691
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||| | |||||||||||||||||||||    
T  13160655 tgaggggtaacctcggcgcaactggtaaagttgttgt 13160691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 17823529 - 17823565
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||| |||| |||||||||||||||||||||    
T  17823529 tgaggggtaatcttggcgcaactggtaaagttgttgt 17823565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 25250471 - 25250511
Alignment:
Q  152 tttatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||| |||||||||| | |||||||||||||||||||    
T  25250471 tttatgagaggtaaccttggcacaactggtaaagttgttgt 25250511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 28817808 - 28817772
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||  ||||||||||||||||||||    
T  28817808 tgaggggtaaccttggtgcaactggtaaagttgttgt 28817772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 36720749 - 36720785
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| || ||||||||||||||||||    
T  36720749 tgaggggtaaccttggcgtaactggtaaagttgttgt 36720785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 40605087 - 40605051
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  40605087 tgaggggtaactttggcgcaactggtaaagttgttgt 40605051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 41014271 - 41014308
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||| |||||||||||||||||||||    
T  41014271 atgaggggtaaccttggcgcaactggtaaagttgttgt 41014308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 38879534 - 38879570
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  38879534 tgaggggtaaccttggcgcaactggtaaagttgttgt 38879570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 1565385 - 1565420
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  1565385 gaggggtaaccttggcgcaactggtaaagttgttgt 1565420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 19438703 - 19438738
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  19438703 gaggggtaaccttggcgcaactggtaaagttgttgt 19438738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 24448844 - 24448879
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  24448844 gaggggtaaccttggcgcaactggtaaagttgttgt 24448879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 35710267 - 35710302
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  35710267 gaggggtaaccttggcgcaactggtaaagttgttgt 35710302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 22600407 - 22600441
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgtt 190  Q
    |||||||||||||||||| ||||||||||||||||    
T  22600407 tgaggggtaaccttgacgtaactggtaaagttgtt 22600441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 41956883 - 41956921
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  41956883 tatgaggggtaacattggcgcaactggtaaagttgttgt 41956921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 4619284 - 4619252
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||| |||||||||||||||||||||    
T  4619284 gggtaaccttggcgcaactggtaaagttgttgt 4619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 27328709 - 27328741
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||| |||||||||||||||    
T  27328709 gggtaaccttgacgcaattggtaaagttgttgt 27328741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 37024736 - 37024700
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||  ||||||||||||||||||||    
T  37024736 tgaggggtaaccttggtgcaactggtaaagttgttgt 37024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 43334159 - 43334191
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||| |||||||||||||||||||||    
T  43334159 gggtaaccttggcgcaactggtaaagttgttgt 43334191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 17896215 - 17896248
Alignment:
Q  159 ggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||||||||||||||||||||    
T  17896215 ggggtaaccttgacgcaactggtaaagttgttgt 17896248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 8455502 - 8455462
Alignment:
Q  152 tttatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  8455502 tttaagaggggtaaccttggcgcaactggtaaagttgttgt 8455462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 12024107 - 12024064
Alignment:
Q  148 caaatttatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  12024107 caaattta-gaggggtaaccttggcgcaactggtaaagttgttgt 12024064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 14530271 - 14530307
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14530271 tgaggggtaaccttggcgcaactggtaaagttgttgt 14530307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 25079900 - 25079864
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  25079900 tgaggggtaaccttggcgcaactggtaaagttgttgt 25079864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 39189603 - 39189567
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  39189603 tgaggggtaaccttggcgcaactggtaaagttgttgt 39189567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 23397717 - 23397755
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  23397717 tatgaggggtaaccttggtgcaactggtaaagttgttgt 23397755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 24200805 - 24200771
Alignment:
Q  158 aggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| ||||||||||||||||||||    
T  24200805 aggggtaaccttgatgcaactggtaaagttgttgt 24200771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 11514392 - 11514425
Alignment:
Q  159 ggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||| |||||||||||||||||||||    
T  11514392 ggggtaaccttggcgcaactggtaaagttgttgt 11514425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 22371009 - 22371046
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||| | |||||||||||||||||||    
T  22371009 atgaggggtaaccttggcccaactggtaaagttgttgt 22371046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 21779441 - 21779405
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  21779441 tgaggggtaaccttggcgcaactggtgaagttgttgt 21779405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 10226 - 10194
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||||||||||||||||||||    
T  10226 gggtaaccttgacgcaactggtaaagttgttgt 10194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 20554 - 20522
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||||||||||||||||||||    
T  20554 gggtaaccttgacgcaactggtaaagttgttgt 20522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 34714599 - 34714635
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34714599 tgaggggtaaccttggcgcaactggtaaagttgttgt 34714635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 34725278 - 34725242
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34725278 tgaggggtaaccttggcgcaactggtaaagttgttgt 34725242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 41319988 - 41319952
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||| |||||||||||||||||||    
T  41319988 tgaggggtaaccttgacacaactggtaaagttgttgt 41319952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 10668197 - 10668232
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  10668197 gaggggtaaccttggcgcaactggtaaagttgttgt 10668232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 18944620 - 18944655
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  18944620 gaggggtaaccttggcgcaactggtaaagttgttgt 18944655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 22930248 - 22930213
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  22930248 gaggggtaaccttggcgcaactggtaaagttgttgt 22930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 32632737 - 32632702
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  32632737 gaggggtaaccttggcgcaactggtaaagttgttgt 32632702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 14617012 - 14617050
Alignment:
Q  154 tatgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  14617012 tatgaggggtaaccttggcgcaaccggtaaagttgttgt 14617050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 19932935 - 19932898
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  19932935 atgaggggttaccttggcgcaactggtaaagttgttgt 19932898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 40424721 - 40424754
Alignment:
Q  159 ggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||| |||||||||||||||||||||    
T  40424721 ggggtaaccttggcgcaactggtaaagttgttgt 40424754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 23768498 - 23768466
Alignment:
Q  160 gggtaaccttgacgcaactggtaaagttgttgt 192  Q
    ||||||||| |||||||||||||||||||||||    
T  23768498 gggtaacctcgacgcaactggtaaagttgttgt 23768466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 30533 - 30568
Alignment:
Q  157 gaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  30533 gaggggtaaccttggcgcaactggtaaagttgttgt 30568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 83827 - 83864
Alignment:
Q  155 atgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  83827 atgaggggtaaccttggcgcaactagtaaagttgttgt 83864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 226588 - 226552
Alignment:
Q  156 tgaggggtaaccttgacgcaactggtaaagttgttgt 192  Q
    |||| |||||||||| |||||||||||||||||||||    
T  226588 tgagtggtaaccttggcgcaactggtaaagttgttgt 226552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University