View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10732_low_2 (Length: 439)

Name: NF10732_low_2
Description: NF10732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10732_low_2
NF10732_low_2
[»] chr2 (15 HSPs)
chr2 (92-413)||(36041589-36041908)
chr2 (40-87)||(16403522-16403569)
chr2 (40-91)||(34107488-34107539)
chr2 (40-90)||(31149152-31149202)
chr2 (41-93)||(25553197-25553249)
chr2 (40-91)||(11069396-11069447)
chr2 (40-90)||(33482693-33482743)
chr2 (56-94)||(43684269-43684307)
chr2 (39-80)||(6866512-6866553)
chr2 (38-87)||(27463575-27463624)
chr2 (56-91)||(41541582-41541617)
chr2 (43-90)||(43027149-43027196)
chr2 (41-91)||(3330253-3330303)
chr2 (100-185)||(35984634-35984719)
chr2 (40-72)||(17543141-17543173)
[»] chr4 (23 HSPs)
chr4 (1-91)||(51974740-51974832)
chr4 (1-91)||(8716400-8716492)
chr4 (40-92)||(23448965-23449017)
chr4 (40-90)||(40407012-40407062)
chr4 (40-88)||(16556447-16556495)
chr4 (41-92)||(46283114-46283165)
chr4 (40-88)||(39387474-39387522)
chr4 (40-91)||(13210215-13210266)
chr4 (40-91)||(27862882-27862933)
chr4 (40-95)||(35909080-35909135)
chr4 (41-92)||(41971351-41971402)
chr4 (1-88)||(36993037-36993126)
chr4 (42-91)||(49635425-49635474)
chr4 (40-80)||(8716558-8716598)
chr4 (40-92)||(50815699-50815751)
chr4 (40-91)||(2832122-2832173)
chr4 (56-91)||(37574266-37574301)
chr4 (40-87)||(45847977-45848024)
chr4 (40-75)||(52366216-52366251)
chr4 (40-74)||(22096442-22096476)
chr4 (47-93)||(43362226-43362272)
chr4 (41-86)||(42154564-42154609)
chr4 (56-84)||(9884825-9884853)
[»] chr6 (16 HSPs)
chr6 (40-93)||(18903418-18903471)
chr6 (40-91)||(6228311-6228362)
chr6 (40-91)||(15717064-15717115)
chr6 (40-92)||(29322027-29322079)
chr6 (40-87)||(25045737-25045784)
chr6 (40-85)||(24794946-24794991)
chr6 (40-80)||(19748103-19748143)
chr6 (40-90)||(20415613-20415663)
chr6 (40-90)||(28536219-28536269)
chr6 (44-89)||(17216953-17216998)
chr6 (42-90)||(21874274-21874322)
chr6 (40-91)||(4854357-4854408)
chr6 (45-91)||(18618595-18618641)
chr6 (36-88)||(11611354-11611407)
chr6 (40-88)||(1128470-1128518)
chr6 (44-88)||(30422163-30422207)
[»] chr5 (13 HSPs)
chr5 (40-97)||(38503308-38503365)
chr5 (40-90)||(31250141-31250191)
chr5 (40-88)||(42208913-42208961)
chr5 (38-93)||(461997-462052)
chr5 (40-91)||(12375463-12375514)
chr5 (40-90)||(43227860-43227910)
chr5 (2-85)||(17077360-17077445)
chr5 (40-77)||(42643854-42643891)
chr5 (40-91)||(930989-931040)
chr5 (48-94)||(13576313-13576359)
chr5 (42-91)||(87784-87833)
chr5 (42-91)||(15470674-15470723)
chr5 (44-80)||(5263173-5263209)
[»] chr3 (23 HSPs)
chr3 (40-97)||(2259144-2259201)
chr3 (40-90)||(25165434-25165484)
chr3 (40-90)||(29226320-29226370)
chr3 (40-98)||(39739260-39739318)
chr3 (42-91)||(30162650-30162699)
chr3 (40-93)||(46247251-46247304)
chr3 (40-91)||(11483606-11483657)
chr3 (40-91)||(33528256-33528307)
chr3 (40-87)||(34225192-34225239)
chr3 (1-89)||(47864631-47864721)
chr3 (40-94)||(46798572-46798626)
chr3 (42-91)||(55426107-55426156)
chr3 (40-96)||(42913446-42913502)
chr3 (40-99)||(1084079-1084138)
chr3 (40-91)||(36590383-36590434)
chr3 (40-91)||(50381707-50381758)
chr3 (40-93)||(27817118-27817171)
chr3 (38-90)||(7517934-7517986)
chr3 (40-92)||(32421340-32421392)
chr3 (44-91)||(7239799-7239846)
chr3 (40-91)||(8258145-8258196)
chr3 (47-79)||(33780308-33780340)
chr3 (56-92)||(45431619-45431655)
[»] chr7 (22 HSPs)
chr7 (40-92)||(48433761-48433813)
chr7 (40-91)||(40273814-40273865)
chr7 (40-98)||(12166068-12166126)
chr7 (42-91)||(23824644-23824693)
chr7 (2-88)||(27454007-27454095)
chr7 (40-91)||(1575687-1575738)
chr7 (40-91)||(26456056-26456107)
chr7 (40-87)||(42554631-42554678)
chr7 (40-90)||(42338298-42338348)
chr7 (40-92)||(31793460-31793512)
chr7 (40-91)||(3902324-3902375)
chr7 (41-91)||(33248854-33248904)
chr7 (45-91)||(36528275-36528321)
chr7 (41-90)||(43440683-43440732)
chr7 (43-91)||(46266661-46266709)
chr7 (56-91)||(14707286-14707321)
chr7 (44-91)||(24029978-24030025)
chr7 (40-91)||(34322075-34322126)
chr7 (40-91)||(38378212-38378263)
chr7 (49-91)||(44986587-44986629)
chr7 (56-92)||(15025148-15025184)
chr7 (50-94)||(37918670-37918714)
[»] chr1 (29 HSPs)
chr1 (40-92)||(34702364-34702416)
chr1 (40-92)||(49619964-49620016)
chr1 (44-91)||(35527390-35527437)
chr1 (40-91)||(50011500-50011551)
chr1 (40-90)||(24134675-24134725)
chr1 (40-88)||(47651868-47651916)
chr1 (40-91)||(27054683-27054734)
chr1 (40-91)||(39304254-39304305)
chr1 (42-91)||(2017737-2017786)
chr1 (40-96)||(43109289-43109345)
chr1 (40-88)||(48497264-48497312)
chr1 (40-91)||(12973329-12973380)
chr1 (44-91)||(15417872-15417919)
chr1 (44-91)||(15550879-15550926)
chr1 (40-91)||(22386287-22386338)
chr1 (40-91)||(50065003-50065054)
chr1 (41-91)||(4126892-4126942)
chr1 (53-91)||(35309718-35309756)
chr1 (41-86)||(50302903-50302948)
chr1 (44-88)||(7438617-7438661)
chr1 (55-91)||(35527567-35527603)
chr1 (40-91)||(8893853-8893904)
chr1 (45-92)||(40061435-40061482)
chr1 (40-90)||(25585357-25585407)
chr1 (42-88)||(47428948-47428994)
chr1 (40-85)||(30735827-30735872)
chr1 (40-88)||(23368783-23368831)
chr1 (41-93)||(47683644-47683696)
chr1 (40-80)||(52164422-52164462)
[»] chr8 (26 HSPs)
chr8 (40-91)||(13906677-13906728)
chr8 (40-91)||(41454878-41454929)
chr8 (40-90)||(1032564-1032614)
chr8 (40-91)||(10161957-10162008)
chr8 (40-91)||(30466672-30466723)
chr8 (40-87)||(41845480-41845527)
chr8 (40-91)||(44828484-44828535)
chr8 (40-88)||(29114098-29114146)
chr8 (40-80)||(38289286-38289326)
chr8 (40-91)||(4259852-4259903)
chr8 (41-79)||(39104612-39104650)
chr8 (1-91)||(8350429-8350521)
chr8 (40-92)||(19733120-19733172)
chr8 (40-88)||(34037999-34038047)
chr8 (44-92)||(36587705-36587753)
chr8 (40-91)||(23139067-23139118)
chr8 (41-80)||(33820447-33820486)
chr8 (40-91)||(38063970-38064021)
chr8 (40-86)||(36103973-36104019)
chr8 (42-80)||(38544977-38545015)
chr8 (40-77)||(280047-280084)
chr8 (40-77)||(635768-635805)
chr8 (40-77)||(821571-821608)
chr8 (47-80)||(43456710-43456743)
chr8 (40-80)||(8349534-8349574)
chr8 (65-97)||(41321888-41321920)
[»] scaffold0018 (1 HSPs)
scaffold0018 (40-91)||(121850-121901)
[»] scaffold0001 (1 HSPs)
scaffold0001 (40-91)||(419705-419756)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 92 - 413
Target Start/End: Original strand, 36041589 - 36041908
Alignment:
Q  92 taattttcttcttcttaattatgtataaaacattgcattcccttcttgtgacattcatttattcttatttgacatgcaggttttctcccctgcaaaatta 191  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36041589 taattttcttcttcttaatcatgtataaaacattgcattcccttcttgtgacattcatttattcttatttgacatgcaggttttcacccctgcaaaatta 36041688  T
Q  192 acgagcattgtacaacttataaatgtcttcttaccggagagccttggtgttttatggatttttgtcattgtatgtattttaattaagtgtaaaaactaag 291  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  36041689 acgagcattgtacaacttataaatgtcttcttaccggacagccttggtgttttatggatttttgtctttgtatgtattttaattaagtgt--aaactaag 36041786  T
Q  292 ttaaacattatgaaatttgatttgtatgcgacaatgtttcaactgttatgtaattttcgcattttggattatgattttgtgactttcaattctttttggt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36041787 ttaaacattatgaaatttgatttgtatgcgacaatgtttcaactgttatgtaattttcgcattttggattatgattttgtgactttcaattctttttggt 36041886  T
Q  392 aatctcaaaagcgtattattat 413  Q
    ||||||||||||||||||||||    
T  36041887 aatctcaaaagcgtattattat 36041908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 16403569 - 16403522
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgg 87  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  16403569 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgg 16403522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 34107539 - 34107488
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| |||||    
T  34107539 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatagggac 34107488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 31149152 - 31149202
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||    
T  31149152 cctgcacatattgtgcattatcccttaccaaatgagctatgctcatgggga 31149202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 25553197 - 25553249
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggacta 93  Q
    |||||||||||||| |||||||||||||||||||  |||| ||||||||||||    
T  25553197 ctgcacatattgtgcattatcccttaccaaatgaattaagctcatggggacta 25553249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 11069396 - 11069447
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||    
T  11069396 cctgcacatattgtgcattattccttaccaaatgagctaagctcatgcggac 11069447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 33482693 - 33482743
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    |||||| |||||||| || || |||||||||||||||||||||||||||||    
T  33482693 cctgcatatattgtgcatcattccttaccaaatgagctaagttcatgggga 33482743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 43684307 - 43684269
Alignment:
Q  56 attatcccttaccaaatgagctaagttcatggggactaa 94  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  43684307 attatcccttaccaaatgagctaagctcatggggactaa 43684269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 6866553 - 6866512
Alignment:
Q  39 tcctgcacatattgtgtattatcccttaccaaatgagctaag 80  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  6866553 tcctgcacatattgtgcattatcccttaccaaatgagttaag 6866512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 27463575 - 27463624
Alignment:
Q  38 ctcctgcacatattgtgtattatcccttaccaaatgagctaagttcatgg 87  Q
    |||||||| |||||||| ||||| ||||||||||||||||||| ||||||    
T  27463575 ctcctgcatatattgtgcattattccttaccaaatgagctaagctcatgg 27463624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 41541582 - 41541617
Alignment:
Q  56 attatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41541582 attatcccttaccaaatgagctaagctcatggggac 41541617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 43027196 - 43027149
Alignment:
Q  43 gcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||| |||||| ||||||||||| ||||||||||||| |||||||||    
T  43027196 gcacaaattgtgcattatcccttatcaaatgagctaagctcatgggga 43027149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 3330253 - 3330303
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||||||||| |||||||||||| ||||||| ||||  |||||||||    
T  3330253 ctgcacatattgtgcattatcccttactaaatgagttaagcacatggggac 3330303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 35984634 - 35984719
Alignment:
Q  100 ttcttcttaattatgtataaaacattgcattcccttcttgtgacattcatttattcttatttgacatgcaggttttctcccctgca 185  Q
    ||||| ||||| || ||||||| |||  || ||||||| || ||||||||||||||||| |||| || ||||||||| ||| ||||    
T  35984634 ttcttattaatcatatataaaatattttatccccttctagtaacattcatttattcttaattgaaatacaggttttcgcccttgca 35984719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 17543141 - 17543173
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaat 72  Q
    ||||||||||||||| |||||||||||||||||    
T  17543141 cctgcacatattgtgcattatcccttaccaaat 17543173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 51974832 - 51974740
Alignment:
Q  1 aaagataaataagtggggtgtccgaggttcatatta--actcctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||||| ||||||||||||  ||    || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  51974832 aaagataaataagtgggatgtccgaggttcgaatcccgacccctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 51974740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 8716400 - 8716492
Alignment:
Q  1 aaagataaataagtggggtgtccgaggttcata--ttaactcctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||||||||||   |||||  |  || ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  8716400 aaagataaataagtggggtgtcgagggttcgaaccttgacttctgcacatattgtgcattatcccttatcaaatgagctaagttcatggggac 8716492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 23449017 - 23448965
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  23449017 cctgcacatattgtgcattatcccttaccaaataagctaagttcatggggact 23448965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 40407012 - 40407062
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  40407012 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgggga 40407062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 16556495 - 16556447
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  16556495 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggg 16556447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 46283165 - 46283114
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||||||||    
T  46283165 ctgcacatattgtgcattatcccttaccaaatgaggtaagctcatggggact 46283114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 39387522 - 39387474
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    |||||||| ||| || |||||||||||||||||||||||||||||||||    
T  39387522 cctgcacaaattatgcattatcccttaccaaatgagctaagttcatggg 39387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 13210215 - 13210266
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||| |||||    
T  13210215 cctgcacatattgtgcattatccctgaccaaatgagctaagctcatagggac 13210266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 27862882 - 27862933
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||| |||||| ||||||||||| ||||||||||||| ||||||||||    
T  27862882 cctgcacaaattgtgcattatcccttatcaaatgagctaagctcatggggac 27862933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 35909080 - 35909135
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaat 95  Q
    |||||| |||||||| |||||||||||| |||||||||||| |||||| |||||||    
T  35909080 cctgcatatattgtgcattatcccttacaaaatgagctaagctcatggagactaat 35909135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 41971351 - 41971402
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    ||||||| |||||| |||||| |||||||||||||||||| |||||||||||    
T  41971351 ctgcacaaattgtgcattatcacttaccaaatgagctaagctcatggggact 41971402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36993126 - 36993037
Alignment:
Q  1 aaagataaataagtggggtgtccgaggttcatatt--aactcctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    |||||| ||||| ||||||||||| |||||| |    ||| ||| ||||||||||| ||||||||||| ||||||||||||| |||||||    
T  36993126 aaagatgaataattggggtgtccggggttcaaaccccaaccccttcacatattgtgcattatcccttatcaaatgagctaagctcatggg 36993037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 49635474 - 49635425
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||| |||||||| ||||||||||||||||||||||||  ||||||||||    
T  49635474 tgcatatattgtgcattatcccttaccaaatgagctaaactcatggggac 49635425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 8716598 - 8716558
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaag 80  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  8716598 cctgcacatattgtgcattatcccttaccaaatgagataag 8716558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 50815751 - 50815699
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    |||||||| |||||| ||||||| ||| ||||||||||||| |||||||||||    
T  50815751 cctgcacaaattgtgcattatcctttatcaaatgagctaagctcatggggact 50815699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 2832122 - 2832173
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| || | ||||||||| |||||||||| ||||||||||    
T  2832122 cctgcacatattgtgcatcaccccttaccagatgagctaagctcatggggac 2832173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 37574301 - 37574266
Alignment:
Q  56 attatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37574301 attatcccttaccaaatgagctaagctcatggggac 37574266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 45847977 - 45848024
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgg 87  Q
    |||||||||||| || ||||||||||| |||||||| |||||||||||    
T  45847977 cctgcacatattatgcattatcccttatcaaatgagataagttcatgg 45848024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 52366251 - 52366216
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgag 75  Q
    ||||||||||||||| ||||||||||||||||||||    
T  52366251 cctgcacatattgtgcattatcccttaccaaatgag 52366216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 22096442 - 22096476
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatga 74  Q
    ||||||||||||||| |||||||||||||||||||    
T  22096442 cctgcacatattgtgcattatcccttaccaaatga 22096476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 43362226 - 43362272
Alignment:
Q  47 atattgtgtattatcccttaccaaatgagctaagttcatggggacta 93  Q
    |||||||| ||||||||||| ||||||||||||| ||||||| ||||    
T  43362226 atattgtgcattatcccttagcaaatgagctaagctcatgggaacta 43362272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 42154609 - 42154564
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatg 86  Q
    |||||||||||||| ||||||||||||||||| || |||| |||||    
T  42154609 ctgcacatattgtgaattatcccttaccaaataagttaagctcatg 42154564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 9884853 - 9884825
Alignment:
Q  56 attatcccttaccaaatgagctaagttca 84  Q
    |||||||||||||||||||||||||||||    
T  9884853 attatcccttaccaaatgagctaagttca 9884825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 18903418 - 18903471
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggacta 93  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  18903418 cctgcacatattgtgtattatcccttgccaaatgagctaagctcatggggacta 18903471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 6228311 - 6228362
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  6228311 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 6228362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 15717064 - 15717115
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  15717064 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 15717115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 29322027 - 29322079
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  29322027 cctgcacatattgtgcattatcccttaccaaatgatctaagttcatgaggact 29322079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 25045784 - 25045737
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgg 87  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  25045784 cctgcacatattgtgaattatcccttaccaaatgagctaagctcatgg 25045737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 24794946 - 24794991
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcat 85  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  24794946 cctgcacatattgtgcattatcccttaccaaatgagctaagctcat 24794991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 19748143 - 19748103
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaag 80  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  19748143 cctgcacatattgtgcattatcccttaccaaatgagctaag 19748103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 20415613 - 20415663
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| |||||||||||| |||||||||||  |||||||||    
T  20415613 cctgcacatattgtgcattatcccttacaaaatgagctaaactcatgggga 20415663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 28536219 - 28536269
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    |||||||||||||| |||| |||||| |||||||||||||| |||||||||    
T  28536219 cctgcacatattgtatattttcccttgccaaatgagctaagctcatgggga 28536269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 17216998 - 17216953
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatgggg 89  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||    
T  17216998 cacatattatgcattatcccttaccaaatgagctaagctcatgggg 17216953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 21874274 - 21874322
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||| |||||||||||||||||||| |||| | |||||||    
T  21874274 tgcacatattgtgcattatcccttaccaaatgagttaagcttatgggga 21874322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 4854357 - 4854408
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||| |||||  |||||||||| |||||||||||||| ||||||||||    
T  4854357 cctgcacacattgtacattatcccttgccaaatgagctaagctcatggggac 4854408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 18618595 - 18618641
Alignment:
Q  45 acatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  18618595 acatattgtgcattatcttttaccaaatgagctaagctcatggggac 18618641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 11611407 - 11611354
Alignment:
Q  36 aactcctgcacatatt-gtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    |||||||||||||||| ||| ||| ||||||||||||||| ||||| |||||||    
T  11611407 aactcctgcacatatttgtgcattgtcccttaccaaatgaactaagctcatggg 11611354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 1128470 - 1128518
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    |||||||||||| || ||||||||||| |||||||| |||| |||||||    
T  1128470 cctgcacatattatgcattatcccttatcaaatgagttaaggtcatggg 1128518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 30422163 - 30422207
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    ||||||||||  |||||||||||||||||||| |||| |||||||    
T  30422163 cacatattgtacattatcccttaccaaatgagttaagctcatggg 30422207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 38503308 - 38503365
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaattt 97  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  38503308 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggacaaattt 38503365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 31250191 - 31250141
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  31250191 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgggga 31250141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 42208961 - 42208913
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  42208961 cctgcacatattgtgtattatcccttactaaatgagctaagctcatggg 42208913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 462052 - 461997
Alignment:
Q  38 ctcctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggacta 93  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  462052 ctcctacacatattgtgcattaccccttaccaaatgagctaagttcatagggacta 461997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 12375463 - 12375514
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  12375463 cctgcacatattgtgcattatccattaccaaatgagctaagctcatggggac 12375514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 43227910 - 43227860
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  43227910 cctgcacatattgtgcattatcccttaccaaatgagctaagctcataggga 43227860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 17077445 - 17077360
Alignment:
Q  2 aagataaataagtggggtgtccgaggttcatatta--actcctgcacatattgtgtattatcccttaccaaatgagctaagttcat 85  Q
    ||||| ||||||||||||||||| |||||  ||    || |||||||| |||||| ||||||||||||||||||||||||| ||||    
T  17077445 aagatgaataagtggggtgtccggggttcgaatcccgacccctgcacaaattgtgcattatcccttaccaaatgagctaagctcat 17077360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 42643854 - 42643891
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagct 77  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  42643854 cctgcacatattgtgcattatcccttaccaaatgagct 42643891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 930989 - 931040
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||| ||||||||| ||||||||| | ||||||||||    
T  930989 cctgcacatattgtgcattgtcccttaccgaatgagctatgctcatggggac 931040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 13576359 - 13576313
Alignment:
Q  48 tattgtgtattatcccttaccaaatgagctaagttcatggggactaa 94  Q
    ||||||| |||||||||||||||||||| |||| ||||| |||||||    
T  13576359 tattgtgcattatcccttaccaaatgagttaagctcatgaggactaa 13576313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 87833 - 87784
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||| |||||||| |||||||||||||||||||| | || ||||||||||    
T  87833 tgcatatattgtgcattatcccttaccaaatgagttgagctcatggggac 87784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 15470674 - 15470723
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||| |||||||||||||||||||  |||| |||| |||||    
T  15470674 tgcacatattgtgcattatcccttaccaaatgaattaagctcatagggac 15470723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 5263209 - 5263173
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaag 80  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  5263209 cacatattgtgcattatccattaccaaatgagctaag 5263173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 2259201 - 2259144
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaattt 97  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  2259201 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggactcattt 2259144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 25165484 - 25165434
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  25165484 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgggga 25165434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 29226370 - 29226320
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  29226370 cctgcacatattgtgtgttatcccttaccaaatgagctaagctcatgggga 29226320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 39739318 - 39739260
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaatttt 98  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| | |||||||    
T  39739318 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgggaattaatttt 39739260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 30162699 - 30162650
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  30162699 tgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 30162650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 46247304 - 46247251
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggacta 93  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  46247304 cctgcacaaattgtgcattatcccttaccaaatgagctaagctcatggggacta 46247251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 11483657 - 11483606
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  11483657 cctgcacatattttgcattatcccttaccaaatgagctaagctcatggggac 11483606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 33528256 - 33528307
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  33528256 cctgcacaaattgtgcattatcccttaccaaatgagctaagctcatggggac 33528307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 34225239 - 34225192
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgg 87  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  34225239 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgg 34225192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 47864721 - 47864631
Alignment:
Q  1 aaagataaataagtggggtgtccgaggttcatatt--aactcctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggg 89  Q
    |||||| ||||||||||||||||| |||||  |    ||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  47864721 aaagatgaataagtggggtgtccggggttcgaaccccaacccctgcacatattgtgcattatcccttaccaaatgagctaagcttatgggg 47864631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 46798626 - 46798572
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaa 94  Q
    ||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||    
T  46798626 cctgcacatattgtgcattatccctcaccaaatgagttaagctcatggggactaa 46798572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 55426156 - 55426107
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  55426156 tgcacatattgtgcattatcctttaccaaatgagctaagctcatggggac 55426107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 42913446 - 42913502
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaatt 96  Q
    ||||||||||||||| ||| ||||||| ||||||||||||| || ||||||||||||    
T  42913446 cctgcacatattgtgcattttcccttagcaaatgagctaagctcgtggggactaatt 42913502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 1084079 - 1084138
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaattttc 99  Q
    ||||||||||||||  ||||||| ||| ||||||||||||| ||||||||||| ||||||    
T  1084079 cctgcacatattgtacattatcctttaacaaatgagctaagctcatggggactgattttc 1084138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 36590434 - 36590383
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||  ||||||||||||||||||||||||  ||||||||||    
T  36590434 cctgcacatattgtacattatcccttaccaaatgagctaatctcatggggac 36590383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 50381758 - 50381707
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||| |||||||| |||||||||||||||||||| |||| ||||||||||    
T  50381758 cctgcatatattgtgcattatcccttaccaaatgagttaagctcatggggac 50381707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 27817118 - 27817171
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggacta 93  Q
    |||||||| |||||| |||||||||||||||||||| |||| |||| |||||||    
T  27817118 cctgcacaaattgtgcattatcccttaccaaatgaggtaagctcatagggacta 27817171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 7517986 - 7517934
Alignment:
Q  38 ctcctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    |||||||||| |||||| | ||||||||||||||||||||||| | |||||||    
T  7517986 ctcctgcacaaattgtgcaatatcccttaccaaatgagctaagctaatgggga 7517934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 32421392 - 32421340
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    |||||| ||||| || |||||||||||||| |||||||||| |||||||||||    
T  32421392 cctgcatatattatgcattatcccttaccagatgagctaagctcatggggact 32421340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 7239846 - 7239799
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||| ||||||||||||||||| ||||| ||| ||||||    
T  7239846 cacatattgtgtaatatcccttaccaaatgaactaagctcacggggac 7239799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 8258196 - 8258145
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| |||| || |||||||||||| |||| ||||||||||    
T  8258196 cctgcacatattgtgcattaaccattaccaaatgagttaagctcatggggac 8258145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 33780340 - 33780308
Alignment:
Q  47 atattgtgtattatcccttaccaaatgagctaa 79  Q
    |||||||| ||||||||||||||||||||||||    
T  33780340 atattgtgcattatcccttaccaaatgagctaa 33780308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 45431655 - 45431619
Alignment:
Q  56 attatcccttaccaaatgagctaagttcatggggact 92  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  45431655 attatcccttaccaagtgagctaagctcatggggact 45431619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 48433761 - 48433813
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  48433761 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggact 48433813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 40273865 - 40273814
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  40273865 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 40273814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 12166126 - 12166068
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaatttt 98  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  12166126 cctgcacaaattgtgcattatcccttaccaaatgagctaagttcatggtgactcatttt 12166068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 23824644 - 23824693
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  23824644 tgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 23824693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 27454095 - 27454007
Alignment:
Q  2 aagataaataagtggggtgtccgaggttcata--ttaactcctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    ||||| |||||||||||||||||||||||  |  |  || |||||||| |||||| ||||||||||||||||||||||||| |||||||    
T  27454095 aagatgaataagtggggtgtccgaggttcgaacctcgacccctgcacaaattgtgcattatcccttaccaaatgagctaagctcatggg 27454007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 1575738 - 1575687
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||| ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  1575738 cctgtacatattgtgtattatcccttaccaaatgagttaagctcatggggac 1575687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 26456056 - 26456107
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  26456056 cctgcacatattgtgcattgtcccttaccaaatgagctaagctcatggggac 26456107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 42554678 - 42554631
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgg 87  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  42554678 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgg 42554631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 42338298 - 42338348
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  42338298 cctgcacatattgtgcattattccttaccaaatgagctaagctcatgggga 42338348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 31793512 - 31793460
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||| |||||    
T  31793512 cctgcacatattgtgcattatcccttaacaaatgagctaagctcatgtggact 31793460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 3902324 - 3902375
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||||||| || ||||||||||||||||||||||||| || |||||||    
T  3902324 cctgcacatattttgcattatcccttaccaaatgagctaagctcgtggggac 3902375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 33248854 - 33248904
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||| |||||||| || |||||||||||||||||||||| ||||||||||    
T  33248854 ctgcatatattgtgcatcatcccttaccaaatgagctaagctcatggggac 33248904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 36528275 - 36528321
Alignment:
Q  45 acatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||    
T  36528275 acatattgtgcattatcccttaccaaatgagttaagctcatggggac 36528321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 43440732 - 43440683
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    |||||||||||||| ||||||||||||||||| | ||||||||| |||||    
T  43440732 ctgcacatattgtgcattatcccttaccaaataaactaagttcacgggga 43440683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 46266709 - 46266661
Alignment:
Q  43 gcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||| |||||| |||||||||||||||||||| |||| ||||||||||    
T  46266709 gcacaaattgtgcattatcccttaccaaatgagttaagctcatggggac 46266661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 14707321 - 14707286
Alignment:
Q  56 attatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14707321 attatcccttaccaaatgagctaagctcatggggac 14707286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 24030025 - 24029978
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||| ||||||||||| ||||||||||||  ||||||||||    
T  24030025 cacatattgtgcattatcccttatcaaatgagctaaactcatggggac 24029978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 34322075 - 34322126
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||| ||||||||||| | | ||||||||    
T  34322075 cctgcacatattgtgcattatcccttatcaaatgagctatgcttatggggac 34322126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 38378263 - 38378212
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||||||||| | ||||  ||||||||||    
T  38378263 cctgcacatattgtgcattatcccttaccaaataaactaaactcatggggac 38378212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 44986629 - 44986587
Alignment:
Q  49 attgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||    
T  44986629 attgtgcattatcccttaccaaatgagctaagctcatgaggac 44986587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 15025184 - 15025148
Alignment:
Q  56 attatcccttaccaaatgagctaagttcatggggact 92  Q
    |||||||||||||||||||| |||| |||||||||||    
T  15025184 attatcccttaccaaatgagttaagctcatggggact 15025148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 37918714 - 37918670
Alignment:
Q  50 ttgtgtattatcccttaccaaatgagctaagttcatggggactaa 94  Q
    ||||| ||||||||||| |||||||| ||||||||| ||||||||    
T  37918714 ttgtgcattatcccttatcaaatgagttaagttcatagggactaa 37918670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 34702364 - 34702416
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  34702364 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggact 34702416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 49620016 - 49619964
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  49620016 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggact 49619964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 35527390 - 35527437
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35527390 cacatattgtgcattatcccttaccaaatgagctaagttcatggggac 35527437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 50011551 - 50011500
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  50011551 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 50011500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 24134675 - 24134725
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  24134675 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgggga 24134725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 47651916 - 47651868
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  47651916 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggg 47651868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 27054734 - 27054683
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  27054734 cctgcagatattgtgcattatcccttaccaaatgagctaagctcatggggac 27054683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 39304254 - 39304305
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  39304254 cctgcacatattatgcattatcccttaccaaatgagctaagctcatggggac 39304305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 2017737 - 2017786
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  2017737 tgcacatattgtgcattatcccttaccaaatgagctaagctcatgaggac 2017786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 43109289 - 43109345
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggactaatt 96  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||| ||| ||||    
T  43109289 cctgcacatattttgcattatcccttaccaaatgagctaagctcatggagacaaatt 43109345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 48497264 - 48497312
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||    
T  48497264 cctgcacatattgtgcattatcccttaccaaatgagctaaactcatggg 48497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 12973329 - 12973380
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||| |||||||| ||||||||||||||||||||||||  ||||||||||    
T  12973329 cctgcatatattgtgcattatcccttaccaaatgagctaaactcatggggac 12973380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 15417872 - 15417919
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  15417872 cacatattgtgcattatcctttaccaaatgagctaagctcatggggac 15417919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 15550926 - 15550879
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||||||    
T  15550926 cacatattgtgcattatcccttaccaaatgagataagctcatggggac 15550879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 22386287 - 22386338
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| || |||||||||||||||||||||| || |||||||    
T  22386287 cctgcacatattgtgcataatcccttaccaaatgagctaagctcgtggggac 22386338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 50065054 - 50065003
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||| ||||||||||||| | ||||||||    
T  50065054 cctgcacatattgtgcattatcccttatcaaatgagctaagcttatggggac 50065003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 4126942 - 4126892
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||| |||||||| ||||||||||||||||||||||||  ||||||||||    
T  4126942 ctgcatatattgtgcattatcccttaccaaatgagctaaactcatggggac 4126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 35309756 - 35309718
Alignment:
Q  53 tgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  35309756 tgtattatcccttaccaaatgagctaagctcatggggac 35309718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 50302903 - 50302948
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatg 86  Q
    ||||||||||| || |||||||||||||||||||||||| ||||||    
T  50302903 ctgcacatattatgcattatcccttaccaaatgagctaaattcatg 50302948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 7438661 - 7438617
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    |||| |||||| ||||||||||||||||||||||||| |||||||    
T  7438661 cacaaattgtgcattatcccttaccaaatgagctaagctcatggg 7438617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 35527567 - 35527603
Alignment:
Q  55 tattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35527567 tattatcccttaccaaatgagctaagctcatggggac 35527603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 8893904 - 8893853
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||| |||||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  8893904 cctgtacatattgtgcattatcccttaccaaatgaactaagctcatgtggac 8893853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 40061482 - 40061435
Alignment:
Q  45 acatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    |||||||||| | |||||||||||||||||| |||| |||||||||||    
T  40061482 acatattgtgcactatcccttaccaaatgagttaagctcatggggact 40061435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 25585357 - 25585407
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| || |||| ||||||||||| ||||| |||||||||    
T  25585357 cctgcacatattgtgcatcatcctttaccaaatgaactaagctcatgggga 25585407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 47428948 - 47428994
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    ||||||||||||||| |||||||||||| |||||||||  |||||||    
T  47428948 tgcacatattgtgtactatcccttaccagatgagctaaactcatggg 47428994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 30735872 - 30735827
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcat 85  Q
    |||||||| |||||| |||||||||||||||||||| |||| ||||    
T  30735872 cctgcacaaattgtgcattatcccttaccaaatgagttaagctcat 30735827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 23368783 - 23368831
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    |||||||| | |||| ||||||||||| ||||||||||||| |||||||    
T  23368783 cctgcacaaaatgtgcattatcccttatcaaatgagctaagctcatggg 23368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 47683696 - 47683644
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggacta 93  Q
    |||||||||||||| ||||||||||||||| | ||||||  |||| |||||||    
T  47683696 ctgcacatattgtgcattatcccttaccaattaagctaatctcatagggacta 47683644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 52164422 - 52164462
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaag 80  Q
    ||||||||||||||| |||||| ||||||||||||| ||||    
T  52164422 cctgcacatattgtgcattatctcttaccaaatgagttaag 52164462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 13906677 - 13906728
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  13906677 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 13906728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 41454878 - 41454929
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  41454878 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatggggac 41454929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 1032614 - 1032564
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgggga 90  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  1032614 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgggga 1032564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 10162008 - 10161957
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  10162008 cctgcacatattgtgcattatcccttaccagatgagctaagctcatggggac 10161957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 30466723 - 30466672
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  30466723 cctgcacatattgtgcattagcccttaccaaatgagctaagctcatggggac 30466672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 41845480 - 41845527
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatgg 87  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  41845480 cctgcacatattgtgcattatcccttaccaaatgagctaagctcatgg 41845527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 44828484 - 44828535
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  44828484 cctgcacaaattgtgcattatcccttaccaaatgagctaagctcatggggac 44828535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 29114146 - 29114098
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  29114146 cctgcacaaattgtgcattatcccttatcaaatgagctaagttcatggg 29114098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 38289286 - 38289326
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaag 80  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  38289286 cctgcacatattgtgcattatcccttaccaaatgagctaag 38289326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 4259903 - 4259852
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||| ||||    
T  4259903 cctgcacatattgtgcattatcccttaccaaatgagttaagctcatgcggac 4259852  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 39104650 - 39104612
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaa 79  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  39104650 ctgcacatattgtgcattatcccttaccaaatgagctaa 39104612  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 8350521 - 8350429
Alignment:
Q  1 aaagataaataagtggggtgtccgaggttcatattaa--ctcctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||| |||||||||||||||||||||||  | |    | |||||| ||||||||||||||| ||||||||||||| |||| | ||||||||    
T  8350521 aaagatgaataagtggggtgtccgaggttcgaactccggcccctgcatatattgtgtattatcacttaccaaatgagttaagcttatggggac 8350429  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 19733120 - 19733172
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    |||||| ||||| || ||||||||||||||||||||||||| | |||||||||    
T  19733120 cctgcatatattatgcattatcccttaccaaatgagctaagcttatggggact 19733172  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 34037999 - 34038047
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggg 88  Q
    ||||||||||||||||||||||||||| ||||| || |||| |||||||    
T  34037999 cctgcacatattgtgtattatcccttatcaaataagttaagctcatggg 34038047  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 36587705 - 36587753
Alignment:
Q  44 cacatattgtgtattatcccttaccaaatgagctaagttcatggggact 92  Q
    |||||||||||| ||||| ||||||||||||| |||| |||||||||||    
T  36587705 cacatattgtgttttatctcttaccaaatgagttaagctcatggggact 36587753  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 23139118 - 23139067
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||| |||||| ||||||||||  ||||||||||||| ||||||||||    
T  23139118 cctgcacacattgtgcattatcccttgtcaaatgagctaagctcatggggac 23139067  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 33820447 - 33820486
Alignment:
Q  41 ctgcacatattgtgtattatcccttaccaaatgagctaag 80  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  33820447 ctgcacaaattgtgtattatcccataccaaatgagctaag 33820486  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 38064021 - 38063970
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    |||||||| |||||| |||||||||||||||||||  |||| ||||||||||    
T  38064021 cctgcacaaattgtgcattatcccttaccaaatgaattaagctcatggggac 38063970  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 36103973 - 36104019
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatg 86  Q
    ||||||||||||||| ||||||| |||||||||||| |||| |||||    
T  36103973 cctgcacatattgtgcattatcctttaccaaatgagttaagctcatg 36104019  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 38544977 - 38545015
Alignment:
Q  42 tgcacatattgtgtattatcccttaccaaatgagctaag 80  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  38544977 tgcacatattgtgcattatcccttaccaaatgaggtaag 38545015  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 280047 - 280084
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagct 77  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  280047 cctgcacatattgtacattatcccttaccaaatgagct 280084  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 635805 - 635768
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagct 77  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  635805 cctgcacatattgtacattatcccttaccaaatgagct 635768  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 821608 - 821571
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagct 77  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  821608 cctgcacatattgtacattatcccttaccaaatgagct 821571  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 43456710 - 43456743
Alignment:
Q  47 atattgtgtattatcccttaccaaatgagctaag 80  Q
    |||||||| |||||||||||||||||||||||||    
T  43456710 atattgtgcattatcccttaccaaatgagctaag 43456743  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 8349534 - 8349574
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaag 80  Q
    |||||| ||||| ||||||||| ||||||||||||||||||    
T  8349534 cctgcatatattctgtattatcacttaccaaatgagctaag 8349574  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 41321888 - 41321920
Alignment:
Q  65 taccaaatgagctaagttcatggggactaattt 97  Q
    |||||||||||||||||| ||||||||||||||    
T  41321888 taccaaatgagctaagtttatggggactaattt 41321920  T

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Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 121850 - 121901
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||||||||    
T  121850 cctgcacatattgtgcattatcccctaccaaatgagctaagctcatggggac 121901  T

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Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 419756 - 419705
Alignment:
Q  40 cctgcacatattgtgtattatcccttaccaaatgagctaagttcatggggac 91  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  419756 cctgcacatattgttcattatcccttaccaaatgagctaagctcatggggac 419705  T

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