View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10732_low_4 (Length: 293)
Name: NF10732_low_4
Description: NF10732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10732_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 39641747 - 39642008
Alignment:
| Q |
18 |
ttcatcactcaaaacatcgccaacgcgattcttcaaattccgataataagtcaccggaggagaaggcataaactcaaaaccaccaacaccacttctcttt |
117 |
Q |
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| T |
39641747 |
ttcatcactcaaaacatcgccaacgcgattcttcaaattacgataataagtcaccggaggagaaggcataaactcaaaaccaccaacaccacttctcttt |
39641846 |
T |
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| Q |
118 |
ctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaatacgtttctatcgtactct |
217 |
Q |
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| T |
39641847 |
ctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaatacgtttctatcgtactct |
39641946 |
T |
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| Q |
218 |
tgcgctttgttccgtaaacaggttcgcacaacgaaagcaacaccgtttcatcattgttcgcc |
279 |
Q |
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| T |
39641947 |
tgcgctttgttccgtaaacaggttcgcacaacggaagcaacaccgtttcatcattgttcgcc |
39642008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 39680502 - 39680242
Alignment:
| Q |
18 |
ttcatcactcaaaacatcgccaacgcgattcttcaaattccgataataagtcaccggaggagaaggcataaactcaaaaccaccaacaccacttctcttt |
117 |
Q |
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| T |
39680502 |
ttcatcactcaaaacatcgccaacgcgattcttcaaattacgataataagtcactggaggagaaggcataaactcaaacccaccaacaccacttctcttt |
39680403 |
T |
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| Q |
118 |
ctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaatacgtttctatcgtactct |
217 |
Q |
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| T |
39680402 |
ctcatttccctcagtgtcctaaatatatccgctgacatcaacgccaaatgctgtaacccagcaccttcattgtgttccaaatacgtttctatttgactct |
39680303 |
T |
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| Q |
218 |
tgcgctttgttccgtaaacaggttcgcacaacgaaagcaacaccgtttcatcattgttcgc |
278 |
Q |
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| T |
39680302 |
ttctctttgttccgtaaacaggttcattcatcggaagcaaaaccgtttcttcattattcgc |
39680242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 39637118 - 39637316
Alignment:
| Q |
18 |
ttcatcactcaaaacatcgccaacgcgattcttcaaattccgataataagtcaccggaggagaaggcataaactcaaaaccaccaacaccacttctcttt |
117 |
Q |
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||||||| |||||||||| ||||| ||||| ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39637118 |
ttcatcattcaaaacatccccaacacgatttatcaaattcctataataagtaacaggaggagaaggcataaactcaaaaccaccaacaccacttttcttt |
39637217 |
T |
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| Q |
118 |
ctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaatacgtttctatcgtactc |
216 |
Q |
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| T |
39637218 |
ctcatttctctcaatgtcttgaatatatcctccgacatcaacgccacatgttgtaaccctgcaccttcgctgtgttccaaataagtttctatcggactc |
39637316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 7055609 - 7055869
Alignment:
| Q |
18 |
ttcatcactcaaaacatcgccaacgcgattcttcaaattccgataataagtcaccggaggagaaggcataaactcaaaaccaccaacaccacttctcttt |
117 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |||| |
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| T |
7055609 |
ttcatcactcaaaacatcaacgacacgattcttcaaattccgataataagtcactggaggaggagccataaactcaaaaccaccaacaccacttttcttc |
7055708 |
T |
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| Q |
118 |
ctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaatacgtttctatcgtactct |
217 |
Q |
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| T |
7055709 |
ctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaatatgtttctatcggactct |
7055808 |
T |
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| Q |
218 |
tgcgctttgttccgtaaacaggttcgcacaacgaaagcaacaccgtttcatcattgttcgc |
278 |
Q |
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|||||||||||||||||| |||||||| | || ||||||||| |||||||||||| |||| |
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| T |
7055809 |
tgcgctttgttccgtaaatgggttcgcatatcggaagcaacacagtttcatcattgctcgc |
7055869 |
T |
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