View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10733_high_4 (Length: 217)
Name: NF10733_high_4
Description: NF10733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10733_high_4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 35167948 - 35167728
Alignment:
| Q |
1 |
attaaattaaaaatcagatatgaaactttgtacttacactataaatctaataaatataacggtttaatgaatta----tacctgagcagcaacaaggcca |
96 |
Q |
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| T |
35167948 |
attaaattaaaaatcagatatcaaactttgtacttacattataaatctaataaatataacggtttaatcaattaattatacctgagcagcaacaaggcca |
35167849 |
T |
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| Q |
97 |
ctaaaatgagccatatcacaaagcaaaagagcaccacacttatcagcaacatctctaaagcgtttataatcccaatccctagggtaagcactaccaccac |
196 |
Q |
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| T |
35167848 |
ctaaaatgagccatatcacaaagcaaaagagcaccacacttatcagcaacatctctaaagcgtttataatcccaatccctagggtaagcactgccaccac |
35167749 |
T |
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| Q |
197 |
agataatcaacctaggcctaa |
217 |
Q |
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| T |
35167748 |
agataatcaacctaggcctaa |
35167728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 38068820 - 38068963
Alignment:
| Q |
74 |
atacctgagcagcaacaaggccactaaaatgagccatatcacaaagcaaaagagcaccacacttatcagcaacatctctaaagcgtttataatcccaatc |
173 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||| | | |||||||||||| |
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| T |
38068820 |
atacctgagcagcaacaaggccactaatatgagccatatcacaaagcaaaagagcaccacacttatcagcaacttgtctaaaccttccataatcccaatc |
38068919 |
T |
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| Q |
174 |
cctagggtaagcactaccaccacagataatcaacctaggcctaa |
217 |
Q |
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| T |
38068920 |
tctaggataagcacttccaccacaaataatcaacttaggtctaa |
38068963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 33131149 - 33131032
Alignment:
| Q |
85 |
gcaacaaggccactaaaatgagccatatcacaaagcaaaagagcaccacacttatcagcaacatctctaaagcgtttataatcccaatccctagggtaag |
184 |
Q |
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|||||||| ||||||| ||||||||||||||| | ||||| ||| ||||| |||||||||| | ||||| | ||||||||| || ||||| |||| |
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| T |
33131149 |
gcaacaagtccactaatatgagccatatcacacatcaaaacagctccacatttatcagcaatcttcctaaacctcgcataatcccattctctaggataag |
33131050 |
T |
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| Q |
185 |
cactaccaccacagataa |
202 |
Q |
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| T |
33131049 |
aactaccaccacaaataa |
33131032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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