View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10733_high_5 (Length: 204)
Name: NF10733_high_5
Description: NF10733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10733_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 41483502 - 41483679
Alignment:
| Q |
11 |
ggagcagagagcaagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaggaaaagatgcttgaacatttcaataagggtatgttg |
110 |
Q |
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| T |
41483502 |
ggagcagacagcaagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaggaaaagatgcttgaacatttcaataagggtatgttg |
41483601 |
T |
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| Q |
111 |
atagttaaactgaatatttctaattaatattggtgttctgtttctttgatttagaggtgaaacattctggtttttact |
188 |
Q |
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| T |
41483602 |
atagttaaactgaatatttctaattaatattggtgttctgtttctttgatttagaggtgaaacattctggtttttact |
41483679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 40750712 - 40750885
Alignment:
| Q |
15 |
cagagagcaagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaggaaaagatgcttgaacatttcaataagggtatgttgatag |
114 |
Q |
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| T |
40750712 |
cagacagcaagcaaatacgatgaggcgaatgtgtccctaaggaaagcaatggaacaaaaagagatgatgcttgaacatttcaataagggtatgttgatag |
40750811 |
T |
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| Q |
115 |
ttaaactgaatatttctaattaatattggtgttctgtttctttgatttagaggtgaaacattctggtttttact |
188 |
Q |
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| T |
40750812 |
ttaaaatgaattgttctaattaatatcggtattccgtctcatcgatttagaggtgaaacactatcgtttttact |
40750885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 41476457 - 41476623
Alignment:
| Q |
20 |
agcaagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaggaaaagatgcttgaacatttcaataagggtatgttgatagttaaa |
119 |
Q |
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| T |
41476457 |
agcaagcaaatatgatgaggctaatgcgttcttaaggaaagtgatggatcaaaaagagaagatgcttgaagcttttaatgagggtatgttgatagttaaa |
41476556 |
T |
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| Q |
120 |
ctgaatatttctaattaatattggtgttctgtttctttgatttagaggtgaaacattctggttttta |
186 |
Q |
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| T |
41476557 |
gtgaattgttctaattaatattggtattctgtttcatggatttagagccaaaacattctggttttta |
41476623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 41469544 - 41469599
Alignment:
| Q |
131 |
taattaatattggtgttctgtttctttgatttagaggtgaaacattctggttttta |
186 |
Q |
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| T |
41469544 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggttttta |
41469599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 16409303 - 16409134
Alignment:
| Q |
15 |
cagagagcaagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaggaaaagatgcttgaacatttcaataagggtatgttgatag |
114 |
Q |
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| T |
16409303 |
cagacagcaagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaagaaaagatgcttgaacattttaataagggtatgttgaaac |
16409204 |
T |
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| Q |
115 |
ttaaactgaatatttctaattaatattggtgttctgtttctttgatttagaggtgaaacattctggttttta |
186 |
Q |
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| T |
16409203 |
ttaga--aaattgttcttattaatatttgtattctgtttctttgatttagaggtgaaacattcttgttttta |
16409134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 52471607 - 52471698
Alignment:
| Q |
22 |
caagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaggaaaagatgcttgaacatttcaataagggtatgttgata |
113 |
Q |
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| T |
52471607 |
caagcaaatatgatgaggctaatgtgttcctaatgaaactgatggatcaagaagaggagatgcttgaaaattttaataagggtatgttgata |
52471698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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