View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10733_low_1 (Length: 422)
Name: NF10733_low_1
Description: NF10733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10733_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 23077687 - 23077269
Alignment:
| Q |
1 |
agttggaaagagtttagatctaagtgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23077687 |
agttggaaagagtttagatctaagtgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtg |
23077588 |
T |
|
| Q |
101 |
ttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaag |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23077587 |
ttagggtacatggaagccaaaaagaggctaaaaaaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaag |
23077488 |
T |
|
| Q |
201 |
tgatgaaagatgttggagatgcaaatgtatgggaagattgtattgatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23077487 |
tgatgaaagatgttggagatgcaaatgtatgggaagattgtattgatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggct |
23077388 |
T |
|
| Q |
301 |
caatgaagttgaggatgcaaccaactttgaacttcctgaatttcttaagtgaaggtaattataatttcattcattgttgtggaatgaaatagcaaacttg |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23077387 |
caatgaagttgaggatgaaaccaactttgaacttcctgaatttcttaagtgaaggtaattataatttcattcattgttgtggaatgaaatagcaaacttg |
23077288 |
T |
|
| Q |
401 |
agaagaagaaaatttgaag |
419 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
23077287 |
agaagaagaaaatttgaag |
23077269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 396
Target Start/End: Complemental strand, 23073080 - 23072688
Alignment:
| Q |
3 |
ttggaaagagtttagatctaagtgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgtt |
102 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |
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|
| T |
23073080 |
ttggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatgacactacatcgtttcggtaacacttctgctagtagcttgtggtatgtgtt |
23072981 |
T |
|
| Q |
103 |
agggtacatggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtg |
202 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23072980 |
agggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtg |
23072881 |
T |
|
| Q |
203 |
atgaaagatgttggagatgcaaatgtatgggaagattgtattgatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctca |
302 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||| |
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|
| T |
23072880 |
atgaaagatgttggagatgcaaatgtttgggaagattgtattgataattatccaccaaagtctttggtcaatcctttcatggagaagtatagttgggtca |
23072781 |
T |
|
| Q |
303 |
atgaagttgaggatgcaaccaactttgaacttcctgaatttcttaagtgaaggtaattataatttcattc-attgttgtggaatgaaatagcaaa |
396 |
Q |
| |
|
|||||||||||||| | | ||||| ||| |||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||||| |||| |
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|
| T |
23072780 |
atgaagttgaggatcctaacaactatgatcttcctgaatttctcaagtgaaggtaat--taatttcattcaatcattgtggaatgaaataccaaa |
23072688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 352
Target Start/End: Original strand, 23111257 - 23111606
Alignment:
| Q |
3 |
ttggaaagagtttagatctaagtgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgtt |
102 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |
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|
| T |
23111257 |
ttggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatgacactacatcgtttcggtaacacttctgctagtagcttgtggtatgtgtt |
23111356 |
T |
|
| Q |
103 |
agggtacatggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtg |
202 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23111357 |
agggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtg |
23111456 |
T |
|
| Q |
203 |
atgaaagatgttggagatgcaaatgtatgggaagattgtattgatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctca |
302 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
23111457 |
atgaaagatgttggagatgcaaatgtttgggaagattgtattgataattatccacctaagtctttggtcaatcctttcatggagaagtatggttgggtca |
23111556 |
T |
|
| Q |
303 |
atgaagttgaggatgcaaccaactttgaacttcctgaatttcttaagtga |
352 |
Q |
| |
|
|||||||||||||| ||| ||| | |||||||||||| |||||||||||| |
|
|
| T |
23111557 |
atgaagttgaggatccaaacaattatgaacttcctgattttcttaagtga |
23111606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 41080170 - 41079965
Alignment:
| Q |
10 |
gagtttagatctaagtgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtac |
109 |
Q |
| |
|
|||||||||||| | ||| ||||| || || || ||||| ||| || ||||| | ||||||||||| || || ||||||||||||||||||| ||||| |
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|
| T |
41080170 |
gagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtgttggggtat |
41080071 |
T |
|
| Q |
110 |
atggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaag |
209 |
Q |
| |
|
|||||||| || |||||| | ||||| ||||| || |||||||| || |||||||| ||||||||||| ||||| | |||||||| |||| || |
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|
| T |
41080070 |
atggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaagtaatgagag |
41079971 |
T |
|
| Q |
210 |
atgttg |
215 |
Q |
| |
|
|||||| |
|
|
| T |
41079970 |
atgttg |
41079965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 52246129 - 52246233
Alignment:
| Q |
25 |
tgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtacatggaagcaaaaaag |
124 |
Q |
| |
|
|||||||||||||||||| || |||||| |||| ||||||| ||||| |||||||||||| | || |||||||| ||||| || ||||||||||||||| |
|
|
| T |
52246129 |
tgaatatgatcttgagccagctaggatggcacttcatcgttggggtaatacttctgctggtggattatggtatgttttaggttatatggaagcaaaaaag |
52246228 |
T |
|
| Q |
125 |
aggct |
129 |
Q |
| |
|
||||| |
|
|
| T |
52246229 |
aggct |
52246233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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