View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10733_low_4 (Length: 260)
Name: NF10733_low_4
Description: NF10733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10733_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 33220134 - 33219926
Alignment:
| Q |
1 |
agtggagaagcagagagagaagaaggtttttccaccggcgataacgttgttgagagaaaccnnnnnnnnnnnnnnnnnnnnnatgccttcgtgttttaag |
100 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
33220134 |
agtgaagaagaagagagagaagaaggtttttccagcggcgataacgttgttgagagaaaccggaggaggaggagga------atgtcttcgtgttttaag |
33220041 |
T |
|
| Q |
101 |
aaggaatatggtgaagatggaaggttgattttaaaggtggggaaagtgaagcgttattatgagcatatggaagcgaatcgagaaaatggtaggctcatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33220040 |
aaggaatatggtgaagatggaaggttgattttaaaggtggggaaagtgaagcgttattatgagcatatggaagcgaatagagaaaatggtaggctcatcg |
33219941 |
T |
|
| Q |
201 |
tgaagctcatccatc |
215 |
Q |
| |
|
||||||||||||||| |
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| T |
33219940 |
tgaagctcatccatc |
33219926 |
T |
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