View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10733_low_6 (Length: 239)
Name: NF10733_low_6
Description: NF10733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10733_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30671703 - 30671518
Alignment:
| Q |
1 |
aacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaaaatcaatcagagggatcaagtgttttggtgttagaggacttgggagt |
100 |
Q |
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| T |
30671703 |
aacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaagatcaatcagagggatcaagtgttttggtgttagaggatttgggagt |
30671604 |
T |
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| Q |
101 |
tgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagcaccagctacttctgagaaaacttgttaatttcagtaa |
186 |
Q |
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| T |
30671603 |
tgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagcaccagctacttctgagaaaacttgttaatttcagtaa |
30671518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 30698484 - 30698335
Alignment:
| Q |
1 |
aacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaaaatcaatcagagggatcaagtgttttggtgttagaggacttgggagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30698484 |
aacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaagatgaatcagagggatcaagtgttttggtgttagaggatttgggagt |
30698385 |
T |
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| Q |
101 |
tgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagca |
150 |
Q |
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| T |
30698384 |
tgaatatctcgagcaacttctaacaatatctgataatcaaagttcaagca |
30698335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 30656542 - 30656393
Alignment:
| Q |
1 |
aacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaaaatcaatcagagggatcaagtgttttggtgttagaggacttgggagt |
100 |
Q |
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| T |
30656542 |
aacaaagaaagttgttatcaaaaggtgtaaagaataataaagcagggagacaagatgaatcagaaggatcaagtgttttggtgttagaggatttgggagt |
30656443 |
T |
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| Q |
101 |
tgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagca |
150 |
Q |
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| T |
30656442 |
tgaatatcttgagcaacttctaaccatatctgataatcaaactacaagca |
30656393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 30689598 - 30689452
Alignment:
| Q |
1 |
aacaaagaaaaatgttatcaaaagctacaaagaataataaagcagggaaacaaaatcaatcagagggatcaagtgttttggtgttagaggacttgggagt |
100 |
Q |
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|||||||||| ||||||||||||| | ||||||||| ||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
30689598 |
aacaaagaaagatgttatcaaaaggtgtaaagaataa---agcagggaaacaagatgaatcagaaggatcaagtgttttggtgttagaggatttgggagt |
30689502 |
T |
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| Q |
101 |
tgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagca |
150 |
Q |
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| T |
30689501 |
tgaatatcttgagcaacttctatccatatctgataatcaaagtacaagca |
30689452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 30710291 - 30710210
Alignment:
| Q |
68 |
atcaagtgttttggtgttagaggacttgggagttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagc |
149 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |
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| T |
30710291 |
atcaagtgtgttggtgttagaggatttgggagttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagc |
30710210 |
T |
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