View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10733_low_7 (Length: 224)

Name: NF10733_low_7
Description: NF10733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10733_low_7
NF10733_low_7
[»] chr3 (4 HSPs)
chr3 (17-206)||(38791578-38791766)
chr3 (17-123)||(407387-407493)
chr3 (17-123)||(416449-416555)
chr3 (24-53)||(49963161-49963190)
[»] chr1 (2 HSPs)
chr1 (17-123)||(24346032-24346138)
chr1 (17-123)||(24358304-24358410)
[»] chr6 (2 HSPs)
chr6 (17-123)||(24183870-24183976)
chr6 (17-55)||(20786105-20786143)
[»] chr7 (1 HSPs)
chr7 (28-107)||(27980168-27980247)
[»] chr2 (2 HSPs)
chr2 (17-55)||(15046547-15046585)
chr2 (24-53)||(15229643-15229672)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 38791766 - 38791578
Alignment:
Q  17 agacattagtaatattacattacatggatagtcttaacacatactttctaaaagccaaaggctcgccgttagttttcctctttttcctaaaagtcaaatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  38791766 agacattagtaatattacattacatggatagtcttaacacatactttctaaaagccaaaggctcaccgttagttttcctctttttcctaaaagtcaaa-g 38791668  T
Q  117 cttgtccaacaaggctatgagctgccctgttgctgcatcttttggtacacagtaaactaacattaaacaaatgagatgagatgagataac 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38791667 cttgtccaacaaggctatgagctgccctcttgctgcatcttttggtacacagtaaactaacattaaacaaatgagatgagatgagataac 38791578  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 407493 - 407387
Alignment:
Q  17 agacattagtaatattacattacatggatagtcttaacacatactttctaaaagccaaaggctcgccgttagttttcctctttttcctaaaagtcaaatg 116  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||  ||||||||||| ||||    ||| |||  |||||||||||||||||||||||    
T  407493 agacatgagtaatattacattacatggatagtcttaacacagacttcttaaaagccaaatgctcattattattttctctctttttcctaaaagtcaaatg 407394  T
Q  117 cttgtcc 123  Q
    |||||||    
T  407393 cttgtcc 407387  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 416449 - 416555
Alignment:
Q  17 agacattagtaatattacattacatggatagtcttaacacatactttctaaaagccaaaggctcgccgttagttttcctctttttcctaaaagtcaaatg 116  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||  ||||||||||| ||||    ||| |||  |||||||||||||||||||||||    
T  416449 agacatgagtaatattacattacatggatagtcttaacacagacttcttaaaagccaaatgctcattattattttctctctttttcctaaaagtcaaatg 416548  T
Q  117 cttgtcc 123  Q
    |||||||    
T  416549 cttgtcc 416555  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 49963161 - 49963190
Alignment:
Q  24 agtaatattacattacatggatagtcttaa 53  Q
    ||||||||||||||||||||||||||||||    
T  49963161 agtaatattacattacatggatagtcttaa 49963190  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 24346032 - 24346138
Alignment:
Q  17 agacattagtaatattacattacatggatagtcttaacacatactttctaaaagccaaaggctcgccgttagttttcctctttttcctaaaagtcaaatg 116  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||  ||||||||||| ||||    ||| |||  |||||||||||||||||||||||    
T  24346032 agacatgagtaatattacattacatggatagtcttaacacagacttcttaaaagccaaatgctcattattattttctctctttttcctaaaagtcaaatg 24346131  T
Q  117 cttgtcc 123  Q
    |||||||    
T  24346132 cttgtcc 24346138  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 24358304 - 24358410
Alignment:
Q  17 agacattagtaatattacattacatggatagtcttaacacatactttctaaaagccaaaggctcgccgttagttttcctctttttcctaaaagtcaaatg 116  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||  ||||||||||| ||||    ||| |||  ||||||||||| |||||||||||    
T  24358304 agacatgagtaatattacattacatggatagtcttaacacagacttcttaaaagccaaatgctcattattattttctctctttttccttaaagtcaaatg 24358403  T
Q  117 cttgtcc 123  Q
     ||||||    
T  24358404 tttgtcc 24358410  T

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Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 24183976 - 24183870
Alignment:
Q  17 agacattagtaatattacattacatggatagtcttaacacatactttctaaaagccaaaggctcgccgttagttttcctctttttcctaaaagtcaaatg 116  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||    ||| |||  ||||||||||| |||||||||||    
T  24183976 agacatgagtaatattacattacatggatagtcttaacacagacttcctaaaagccaaatgctcattattattttctctctttttcctgaaagtcaaatg 24183877  T
Q  117 cttgtcc 123  Q
     ||||||    
T  24183876 tttgtcc 24183870  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 20786143 - 20786105
Alignment:
Q  17 agacattagtaatattacattacatggatagtcttaaca 55  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  20786143 agacatgagtaatattacattgcatggatagtcttaaca 20786105  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 27980168 - 27980247
Alignment:
Q  28 atattacattacatggatagtcttaacacatactttctaaaagccaaaggctcgccgttagttttcctctttttcctaaa 107  Q
    ||||||||| ||||||| |||||||||||| |||| |||||||||||| |||| |  ||| |||| ||||||||||||||    
T  27980168 atattacataacatggacagtcttaacacagacttcctaaaagccaaatgctcactattaatttttctctttttcctaaa 27980247  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 15046585 - 15046547
Alignment:
Q  17 agacattagtaatattacattacatggatagtcttaaca 55  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  15046585 agacatgagtaatattacattgcatggatagtcttaaca 15046547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 15229672 - 15229643
Alignment:
Q  24 agtaatattacattacatggatagtcttaa 53  Q
    ||||||||||||||||||||||||||||||    
T  15229672 agtaatattacattacatggatagtcttaa 15229643  T

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