View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10734_low_1 (Length: 388)

Name: NF10734_low_1
Description: NF10734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10734_low_1
NF10734_low_1
[»] chr5 (3 HSPs)
chr5 (1-373)||(39732057-39732425)
chr5 (215-269)||(32676875-32676929)
chr5 (232-271)||(40837665-40837704)
[»] chr2 (3 HSPs)
chr2 (224-269)||(32201079-32201124)
chr2 (224-269)||(9929492-9929537)
chr2 (228-269)||(26575930-26575971)
[»] chr7 (5 HSPs)
chr7 (224-270)||(44572669-44572715)
chr7 (224-269)||(27616186-27616231)
chr7 (228-269)||(8799619-8799660)
chr7 (224-271)||(45216171-45216216)
chr7 (232-269)||(10678212-10678249)
[»] chr8 (2 HSPs)
chr8 (226-270)||(15850714-15850758)
chr8 (158-197)||(4770479-4770518)
[»] chr3 (1 HSPs)
chr3 (224-272)||(43922199-43922247)
[»] chr1 (3 HSPs)
chr1 (224-268)||(23431728-23431772)
chr1 (226-269)||(10171701-10171744)
chr1 (224-269)||(32740711-32740756)
[»] chr6 (1 HSPs)
chr6 (224-267)||(12843766-12843809)
[»] chr4 (2 HSPs)
chr4 (224-269)||(54305517-54305562)
chr4 (224-269)||(658677-658722)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 39732057 - 39732425
Alignment:
Q  1 tcaggtattcaatgtcatcatcatcttttaccgatttgattactagtaatgtcttttttatttatataaataaatagtagtaatgtcttctttgctatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  39732057 tcaggtattcaatgtcatcatcatcttttaccgatttgattactagtaatgtcttttttatttttataaataaatagcagtaatgtcttctttgctatgt 39732156  T
Q  101 aacatgacatgctatgaaactagctagtaatgtcnnnnnnnnnnnnnnatatatttataaataaataaatttgtagcggtgtcggtgtccaatgtttttt 200  Q
    ||||||| ||||||||||||||||||||||||||               | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39732157 aacatgatatgctatgaaactagctagtaatgtcttttattttat----tttatttataaataaatatatttgtagcggtgtcggtgtccaatgtttttt 39732252  T
Q  201 gcatttatttagtagtgtcaacatgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggtaatatgtaacttaaaggtccataagtcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732253 gcatttatttagtagtgtcaacatgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggtaatatgtaacttaaaggtccataagtcaa 39732352  T
Q  301 tctggtaaacacggatgaatgatttacgatacggttatgtgggcttattttggtatatggttcatgaacttca 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732353 tctggtaaacacggatgaatgatttacgatacggttatgtgggcttattttggtatatggttcatgaacttca 39732425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 32676875 - 32676929
Alignment:
Q  215 gtgtcaacatgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||    
T  32676875 gtgtcgacgtgtcagtgtcgtgtcaggtgtccgtgtcggagtccatgcttcatag 32676929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 40837704 - 40837665
Alignment:
Q  232 tcgtgtcaggtgttcgtgtcggagtccatgcttcataggt 271  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  40837704 tcgtgtcaggtgtccgtgtcggagtccatacttcataggt 40837665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 32201079 - 32201124
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32201079 tgtcagtgtcgtgtcaggtgttcgtgttggagtccatgcttcatag 32201124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 9929537 - 9929492
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||    
T  9929537 tgtcagtgtcgtgtcaagtgtttgtgtcgtagtccatgcttcatag 9929492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 26575971 - 26575930
Alignment:
Q  228 agtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  26575971 agtgttgtgtcaggtgtccgtgtcggagtccatgcttcatag 26575930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 44572669 - 44572715
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatagg 270  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  44572669 tgtcagtgtcgtgtcaggagtccgtgtcggagtccatgcttcatagg 44572715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 27616231 - 27616186
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27616231 tgtcagtatcgtgtcaggtgtacgtgtcggagtccatgcttcatag 27616186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 8799660 - 8799619
Alignment:
Q  228 agtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  8799660 agtgtcgtgtcaggtgtccgtgtcggagtccatgcgtcatag 8799619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 45216171 - 45216216
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggt 271  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||||    
T  45216171 tgtcagtgtcgtgtcaggtgtccgtgt--gagtccatgcttcataggt 45216216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 10678249 - 10678212
Alignment:
Q  232 tcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  10678249 tcgtatcaggtgtccgtgtcggagtccatgcttcatag 10678212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 15850714 - 15850758
Alignment:
Q  226 tcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatagg 270  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  15850714 tcagtgtcgtgtcaggtgtccgtgtcggagtccatgtttcatagg 15850758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 4770479 - 4770518
Alignment:
Q  158 taaataaataaatttgtagcggtgtcggtgtccaatgttt 197  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  4770479 taaattaataaatttgtaacggtgtcggtgtccaatgttt 4770518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 43922199 - 43922247
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcataggta 272  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  43922199 tgtcagtgtcgtgtcaggtatctgtgtcggagtccatgcttcataggta 43922247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 23431772 - 23431728
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcata 268  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  23431772 tgtcagtgtcgtatcaggtgtccgtgtcggagtccatgcttcata 23431728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 10171701 - 10171744
Alignment:
Q  226 tcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  10171701 tcagtgtcgtgtccggtgtccgtgttggagtccatgcttcatag 10171744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 32740756 - 32740711
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  32740756 tgtcagtgtcgtgtcagatgttcgtgtcgaagtctgtgcttcatag 32740711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 12843809 - 12843766
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcat 267  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  12843809 tgtcagtgtcgtgtcaagtgtccgtgtcggagtccatgcttcat 12843766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 54305562 - 54305517
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  54305562 tgtcagtgttgtgtcaggtgtccgtgttggagtccatgcttcatag 54305517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 658677 - 658722
Alignment:
Q  224 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 269  Q
    ||||||||||||||| ||||| | ||||||||||| ||||||||||    
T  658677 tgtcagtgtcgtgtcgggtgtccatgtcggagtccgtgcttcatag 658722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University