View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10735_low_1 (Length: 469)
Name: NF10735_low_1
Description: NF10735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10735_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 251 - 406
Target Start/End: Original strand, 493041 - 493196
Alignment:
| Q |
251 |
atatatatgagtatttagcccacctaatttgcaatcggagagaattgaatgtgagattttgaggaggagcacattcaaaagtctcaagccaacatccgcg |
350 |
Q |
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| T |
493041 |
atatatatgagtatttagcccacctaatttgcaatcggagagaattgaatgtgagattttgaggaggagcacattctaaagtctcaagccaatatccgcc |
493140 |
T |
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| Q |
351 |
tcaattgccaacccaagtggtttacggtaacaataattctaatgacttcctcccct |
406 |
Q |
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| T |
493141 |
tcaattgccaacccaagtggtttacggtaacaataattctaatgacttcctcccct |
493196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 492784 - 492867
Alignment:
| Q |
149 |
atgtatttccttcgtggttgttccccttgaatcaagaaaatttacttttatcataaaaagaattaaaaatttactttatttgta |
232 |
Q |
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| T |
492784 |
atgtatttccttcgtggttgttccccttgaatcaagaaaatttacttttatcataaaaagaattaaaaatttactttatttgta |
492867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 491987 - 492058
Alignment:
| Q |
20 |
taggcttcatcactgttgagttttttctgatccagatgtgctcaattggcttaaacacaaactaatatttct |
91 |
Q |
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| T |
491987 |
taggcttcatcactgttgagttttttctgatccagatgtgctcaattggcttaaacacaaactaacatttct |
492058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 492087 - 492158
Alignment:
| Q |
80 |
actaatatttctggtccatggaactcttctaatcatatatgcatcaactttcgtcattttattttctacatg |
151 |
Q |
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| T |
492087 |
actaatatttctggtccatggaactcttctaatcatatatgcatcaactttcgtcatgttattttctacatg |
492158 |
T |
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