View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10735_low_2 (Length: 426)
Name: NF10735_low_2
Description: NF10735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10735_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 24563572 - 24563979
Alignment:
| Q |
1 |
ttccaaagcttttgagataacagtgtgatccgaaccaattccaagaaggttcatagcttgaatcagagcaaatgtattggaaaagcccttagcagccata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24563572 |
ttccaaagcttttgagataacagtgtgatccgaaccaattccaagaaggttcataacttgaatcagagcaaatgtattggaaaagcccttagtagccata |
24563671 |
T |
|
| Q |
101 |
ccacgatcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563672 |
ccacgatcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatc |
24563771 |
T |
|
| Q |
201 |
cgtaattaagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563772 |
cgtaattaagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaat |
24563871 |
T |
|
| Q |
301 |
tccaatcattctctcatttcacttcacttataataagatttagtgaaaaaggttacttgctcaccccaaaataaagtgatttttccatctctattagttt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563872 |
tccaatcattctctcatttcacttcacttataataagatttagtgaaaaaggttacttgctcaccccaaaataaagtgatttttccatctctattagttt |
24563971 |
T |
|
| Q |
401 |
tccccttt |
408 |
Q |
| |
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|||||||| |
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|
| T |
24563972 |
tccccttt |
24563979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 124 - 408
Target Start/End: Complemental strand, 45536060 - 45535762
Alignment:
| Q |
124 |
gttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaaccaaaccaac |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| || | |||||||||||||| ||||||||||||||| |
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| T |
45536060 |
gttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaattcagaaaccaaaccaac |
45535961 |
T |
|
| Q |
224 |
-aatggtttagataagttcgcaactgct----ttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaattccaatcattctctcatt |
318 |
Q |
| |
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|||||||||||||||||| ||| || | |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
45535960 |
aaatggtttagataagttcccaagtgttttaattaatttctagactcatgtaaatccttgtatacccgttgaaatcattaattccaatcattctctcatt |
45535861 |
T |
|
| Q |
319 |
tcactt--cacttataataagatttagtgaa-----aaaggttacttgctcaccccaaaataaagtgatttttcca--tctctattagttttccccttt |
408 |
Q |
| |
|
||| || ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
45535860 |
tcaattcacacttataatacgatttagtgaaaaaggaaaggttacttgctcacctcaaaataaagtgatttttccatctctctattagttttccccttt |
45535762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 44337428 - 44337525
Alignment:
| Q |
13 |
tgagataacagtgtgatccgaaccaattccaagaaggttcatagcttgaatcagagcaaatgtattggaaaagcccttagcagccataccacgatcaa |
110 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44337428 |
tgagatagcagtgtgatccgaaccaaattcaagaaggtgcgtaacttgaatcagagcaaatgtattggaaaagcccttagtagccataccacgatcaa |
44337525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 266
Target Start/End: Original strand, 44337629 - 44337779
Alignment:
| Q |
116 |
tatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaa-c |
214 |
Q |
| |
|
|||||| |||||| |||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| | | || || || |||||| ||||| | |
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| T |
44337629 |
tatcttcagttgaacatagtttcttggattccctcacttttc-tgttctaataatagtgtatcattaaattttttgaaatatatttgtaattcagaaaac |
44337727 |
T |
|
| Q |
215 |
caaaccaacaatggtttagataagttcgcaactgctttaatttctagactca |
266 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| || ||||| ||||||||||| |
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|
| T |
44337728 |
caaactaacaatggtttagataagttcccaagtgttttaacttctagactca |
44337779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 45536235 - 45536177
Alignment:
| Q |
52 |
catagcttgaatcagagcaaatgtattggaaaagcccttagcagccataccacgatcaa |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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|
| T |
45536235 |
cataacttgaatcagagcaaatgtattggaaaagcccttggtagctataccacgatcaa |
45536177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 107 - 404
Target Start/End: Original strand, 9798586 - 9798893
Alignment:
| Q |
107 |
tcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaat |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||| | || |||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
9798586 |
tcaactccttatctttagttgagcatatcttcttggattccctccatttgtctgctctaataatagtgtatcattaaaaatctcgaactacatccgtaat |
9798685 |
T |
|
| Q |
207 |
taagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactca--cgtaaatccctgtatgcccgttgaaatcattaattcca |
304 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| || |||| |||||||| ||| ||||||||||| ||||||||||||||| | |
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|
| T |
9798686 |
taagaaaccaaatcaacaatggtttagataagttcccaagtgttttagtttctagattcattcgtaaatccct--------tttgaaatcattaatttct |
9798777 |
T |
|
| Q |
305 |
atcattctctcatttcacttcacttataataagatttagtgaaaa--------------aggttacttgctcaccccaaaataaagtgatttttccatct |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
9798778 |
atcattctctcatttcacttcacttataatacgatttagtgaaaaggaaataatagaagagtttacttgctcgccccataataaagtgatttttccatct |
9798877 |
T |
|
| Q |
391 |
--ctattagttttccc |
404 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9798878 |
cactattagttttccc |
9798893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 19190303 - 19190201
Alignment:
| Q |
124 |
gttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaaccaaaccaac |
223 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| ||||||| ||||||| |||||||||| | || || ||||| | ||||| |||||| |||||||| |
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|
| T |
19190303 |
gttgagcatagcttcttggattccctcactttttctgttctaataatagtacatcattaaaattttcgaaatacattcataattcagaaactaaaccaac |
19190204 |
T |
|
| Q |
224 |
aat |
226 |
Q |
| |
|
||| |
|
|
| T |
19190203 |
aat |
19190201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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