View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10735_low_4 (Length: 278)
Name: NF10735_low_4
Description: NF10735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10735_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 32240558 - 32240813
Alignment:
| Q |
19 |
atcttgatttagattgcgagagagttcttaaagaatgaatccaaaaagaagtcaatataattgagggaatagataaatattctacnnnnnnnnnnnnnnn |
118 |
Q |
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| T |
32240558 |
atcttgatcaagattgcgagagagttcttaaagaatgaagccaaaaagaagtcaatataattgagggaatagataaatattctacattatttatttttat |
32240657 |
T |
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| Q |
119 |
nnnnnatgcaatcaatataccaaatggattagaggatgctttagagagttttagctcgacgacttaactcatcaaacaataaacaatgatgagt----at |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |
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| T |
32240658 |
ttttaatgcaatcaatataccaaatggattagaggatgctttagagagttttagctagacgacttaactcatcaaacaataaacaatgacgagtatgaat |
32240757 |
T |
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| Q |
215 |
gaataatcatatattccattcaatgccaaatcaattaaccaattcatcttcatctc |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240758 |
gaataatcatatattccattcaatgccaaatcaattaaccaattcatcttcatctc |
32240813 |
T |
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