View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10735_low_6 (Length: 241)
Name: NF10735_low_6
Description: NF10735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10735_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 38141971 - 38141815
Alignment:
| Q |
69 |
gggtgcccctaatatg-accttcctaaaagtggttcatccatggacctttacttttttaccggtcataacctattaataaaatactt-nnnnnnnnnnnn |
166 |
Q |
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| T |
38141971 |
gggtgcccctaatatggaccttcctaaaagtggttcatccatggacccttac-tttttaccggtcataacctgttaataaaatacttaaaaaaaataaaa |
38141873 |
T |
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| Q |
167 |
nnttcatgccaccacctgtcttccagttcaatcgtagttttcctggaatacccccatt |
224 |
Q |
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| T |
38141872 |
aattcatgccaccacctgtcttccagttcaatcgcagttttcctggaatactcccatt |
38141815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7719783 - 7719717
Alignment:
| Q |
1 |
ttcaggaccgtttcagaaattttggtaaacaatacccgaacttataatttggactctaattaataaa |
67 |
Q |
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| T |
7719783 |
ttcaggaccgtttcaaaaattttggtgatctatgaccgaacttataatttggactctaattaataaa |
7719717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 17486089 - 17486243
Alignment:
| Q |
69 |
gggtgcccctaatatg-accttcctaaaagtggttcatccatggacctttacttttttaccggtcataacctattaataaaatacttnnnnnnnnnnnnn |
167 |
Q |
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| T |
17486089 |
gggtgcccctaatatggaccttcctaaaagtggttcatccatggatccttac-tttttaccggtcataacctgttaataaaatactt-aaaaaataaaaa |
17486186 |
T |
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| Q |
168 |
nttcatgccaccacctgtcttccagttcaatcgtagttttcctggaatacccccatt |
224 |
Q |
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| T |
17486187 |
attcatgccaccacctgtctttcagttcaatcgcagttttcctggaatactcccatt |
17486243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 17567125 - 17566971
Alignment:
| Q |
69 |
gggtgcccctaatatg-accttcctaaaagtggttcatccatggacctttacttttttaccggtcataacctattaataaaatacttnnnnnnnnnnnnn |
167 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||| |
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| T |
17567125 |
gggtgcccctaatatggaccttcctaaaagtggttcatccatggatccttac-tttttaccggtcataacctgttaataaaatactt-aaaaaataaaaa |
17567028 |
T |
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| Q |
168 |
nttcatgccaccacctgtcttccagttcaatcgtagttttcctggaatacccccatt |
224 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |
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| T |
17567027 |
attcatgccaccacctgtctttcagttcaatcgcagttttcctggaatactcccatt |
17566971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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